MultiBD: Multivariate Birth-Death Processes

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Computationally efficient functions to provide direct likelihood-based inference for partially-observed multivariate birth-death processes. Such processes range from a simple Yule model to the complex susceptible-infectious-removed model in disease dynamics. Efficient likelihood evaluation facilitates maximum likelihood estimation and Bayesian inference.

Author
Lam S.T. Ho [aut, cre], Marc A. Suchard [aut], Forrest W. Crawford [aut], Jason Xu [ctb], Vladimir N. Minin [ctb]
Date of publication
2016-12-05 18:28:46
Maintainer
Marc A. Suchard <msuchard@ucla.edu>
License
Apache License 2.0
Version
0.2.0

View on CRAN

Man pages

bbd_prob
Transition probabilities of a birth/birth-death process
dbd_prob
Transition probabilities of a death/birth-death process
Eyam
Eyam plague.
MultiBD
Multivariate birth-death processes
SIR_prob
Transition probabilities of an SIR process

Files in this package

MultiBD
MultiBD/inst
MultiBD/inst/vignetteCache
MultiBD/inst/vignetteCache/monte_carlo.RData
MultiBD/inst/vignetteCache/post_sample.RData
MultiBD/inst/vignetteCache/tpm_array.RData
MultiBD/inst/vignetteCache/larger_pop.RData
MultiBD/inst/vignetteCache/gen_func.RData
MultiBD/inst/doc
MultiBD/inst/doc/SIR-MCMC.R
MultiBD/inst/doc/SIR-MCMC.Rmd
MultiBD/inst/doc/SIRtrans.R
MultiBD/inst/doc/SIR-MCMC.pdf
MultiBD/inst/doc/SIRtrans.Rnw
MultiBD/inst/doc/SIRtrans.pdf
MultiBD/tests
MultiBD/tests/testthat.R
MultiBD/tests/testthat
MultiBD/tests/testthat/test_some_name.R
MultiBD/tests/testthat/test_SIR.R
MultiBD/src
MultiBD/src/lentz_plus_invBk1dBk_Cpp.cpp
MultiBD/src/bbd_lt_Cpp.cpp
MultiBD/src/Makevars
MultiBD/src/bbd.h
MultiBD/src/prod_lambda2_Cpp.cpp
MultiBD/src/phi_Cpp.cpp
MultiBD/src/bbd_lt_invert_Cpp.cpp
MultiBD/src/inv_Bk1dBk_Cpp.cpp
MultiBD/src/SIR_Cpp.cpp
MultiBD/src/prod_mu2_Cpp.cpp
MultiBD/src/Makevars.win
MultiBD/src/RcppExports.cpp
MultiBD/src/BidBj_Cpp.cpp
MultiBD/src/ThreadPool.h
MultiBD/src/bb_lt_Cpp.cpp
MultiBD/src/bb_lt_invert_Cpp.cpp
MultiBD/NAMESPACE
MultiBD/NEWS
MultiBD/data
MultiBD/data/Eyam.rda
MultiBD/R
MultiBD/R/dbd_prob.R
MultiBD/R/SIR_prob.R
MultiBD/R/MultiBD.R
MultiBD/R/RcppExports.R
MultiBD/R/Eyam.R
MultiBD/R/bbd_prob.R
MultiBD/vignettes
MultiBD/vignettes/SIR-MCMC.Rmd
MultiBD/vignettes/SIR-MCMC.md
MultiBD/vignettes/out.pdf
MultiBD/vignettes/SIRtrans.Rnw
MultiBD/README.md
MultiBD/MD5
MultiBD/build
MultiBD/build/vignette.rds
MultiBD/DESCRIPTION
MultiBD/man
MultiBD/man/SIR_prob.Rd
MultiBD/man/MultiBD.Rd
MultiBD/man/Eyam.Rd
MultiBD/man/bbd_prob.Rd
MultiBD/man/dbd_prob.Rd