MultiBD: Multivariate Birth-Death Processes

Computationally efficient functions to provide direct likelihood-based inference for partially-observed multivariate birth-death processes. Such processes range from a simple Yule model to the complex susceptible-infectious-removed model in disease dynamics. Efficient likelihood evaluation facilitates maximum likelihood estimation and Bayesian inference.

Install the latest version of this package by entering the following in R:
install.packages("MultiBD")
AuthorLam S.T. Ho [aut, cre], Marc A. Suchard [aut], Forrest W. Crawford [aut], Jason Xu [ctb], Vladimir N. Minin [ctb]
Date of publication2016-12-05 18:28:46
MaintainerMarc A. Suchard <msuchard@ucla.edu>
LicenseApache License 2.0
Version0.2.0

View on CRAN

Files

inst
inst/vignetteCache
inst/vignetteCache/monte_carlo.RData
inst/vignetteCache/post_sample.RData
inst/vignetteCache/tpm_array.RData
inst/vignetteCache/larger_pop.RData
inst/vignetteCache/gen_func.RData
inst/doc
inst/doc/SIR-MCMC.R
inst/doc/SIR-MCMC.Rmd
inst/doc/SIRtrans.R
inst/doc/SIR-MCMC.pdf
inst/doc/SIRtrans.Rnw
inst/doc/SIRtrans.pdf
tests
tests/testthat.R
tests/testthat
tests/testthat/test_some_name.R tests/testthat/test_SIR.R
src
src/lentz_plus_invBk1dBk_Cpp.cpp
src/bbd_lt_Cpp.cpp
src/Makevars
src/bbd.h
src/prod_lambda2_Cpp.cpp
src/phi_Cpp.cpp
src/bbd_lt_invert_Cpp.cpp
src/inv_Bk1dBk_Cpp.cpp
src/SIR_Cpp.cpp
src/prod_mu2_Cpp.cpp
src/Makevars.win
src/RcppExports.cpp
src/BidBj_Cpp.cpp
src/ThreadPool.h
src/bb_lt_Cpp.cpp
src/bb_lt_invert_Cpp.cpp
NAMESPACE
NEWS
data
data/Eyam.rda
R
R/dbd_prob.R R/SIR_prob.R R/MultiBD.R R/RcppExports.R R/Eyam.R R/bbd_prob.R
vignettes
vignettes/SIR-MCMC.Rmd
vignettes/SIR-MCMC.md
vignettes/out.pdf
vignettes/SIRtrans.Rnw
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/SIR_prob.Rd man/MultiBD.Rd man/Eyam.Rd man/bbd_prob.Rd man/dbd_prob.Rd

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