NAM: Nested Association Mapping

Designed for association studies in nested association mapping (NAM) panels, also handling experimental and random panels. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.

AuthorAlencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Date of publication2016-10-20 23:14:00
MaintainerAlencar Xavier <alenxav@gmail.com>
LicenseGPL-3
Version1.5.0

View on CRAN

Files

NAM
NAM/inst
NAM/inst/CITATION
NAM/inst/add
NAM/inst/add/Ggamma.R
NAM/inst/add/gwasPAR.R
NAM/inst/add/fastPhase.R
NAM/inst/add/cvNAM.R
NAM/inst/add/modelSelect.R
NAM/inst/add/sparseGMM.R
NAM/inst/doc
NAM/inst/doc/gwa_ge_interactions.pdf
NAM/inst/doc/vignette2.html
NAM/inst/doc/vignette1.Rmd
NAM/inst/doc/background_stat_gen.pdf
NAM/inst/doc/vignette2.Rmd
NAM/inst/doc/vignette1.html
NAM/inst/doc/vignette2.R
NAM/inst/doc/gwa_description.pdf
NAM/src
NAM/src/SAMP.cpp
NAM/src/emBB.cpp
NAM/src/timesMatrix.cpp
NAM/src/emBA.cpp
NAM/src/timesVec.cpp
NAM/src/funI.cpp
NAM/src/funX.cpp
NAM/src/emRR.cpp
NAM/src/emBL.cpp
NAM/src/emBC.cpp
NAM/src/gs.cpp
NAM/src/KMUP.cpp
NAM/src/KMUP2.cpp
NAM/src/SAMP2.cpp
NAM/src/inputRow.cpp
NAM/src/RcppExports.cpp
NAM/src/calcSize.cpp
NAM/NAMESPACE
NAM/demo
NAM/demo/fieldvar.R
NAM/demo/metaGxE.R
NAM/demo/fittingMET.R
NAM/demo/00Index
NAM/demo/metagwas.R
NAM/data
NAM/data/met.RData
NAM/data/tpod.RData
NAM/R
NAM/R/gmm.R NAM/R/wgr.R NAM/R/gwas.R NAM/R/gibbs.R NAM/R/RcppExports.R NAM/R/reml.R NAM/R/snp.R
NAM/vignettes
NAM/vignettes/vignette1.Rmd
NAM/vignettes/vignette2.Rmd
NAM/MD5
NAM/build
NAM/build/vignette.rds
NAM/DESCRIPTION
NAM/man
NAM/man/reference.Rd NAM/man/gmm.Rd NAM/man/wgr.Rd NAM/man/reml.Rd NAM/man/cleanREP.Rd NAM/man/gwas.Rd NAM/man/snpH2.Rd NAM/man/gibbs.Rd NAM/man/snpQC.Rd NAM/man/tpod.Rd NAM/man/NAM-package.Rd NAM/man/Manhattan.Rd NAM/man/met.Rd NAM/man/Fst.Rd NAM/man/Internals.Rd

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