plotCluster | R Documentation |
This function makes an interactive network figure that shows nodes in which nodes belonging to the same cluster are colored the same and nodes belonging to other clusters are colored differently. This function has been customized to use the output of findCluster
.
plotCluster(graph, cluster, ...)
graph |
An igraph object. |
cluster |
An igraph cluster object. |
... |
Pass to |
A networkD3 object.
forceNetwork
# generate an incidence matrix data <- matrix(c(1, 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 0, 0), nrow = 3) colnames(data) <- letters[1:5] rownames(data) <- LETTERS[1:3] # run findCluster() to do clustering cls <- findCluster( data, part = 1, method = "all", normalization = FALSE, rm_weak_edges = TRUE, comparison = FALSE ) # plot the cluster with Louvain method plotCluster(graph = cls$graph, cluster = cls$louvain)
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