NPC: Nonparametric Combination of Hypothesis Tests

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An implementation of nonparametric combination of hypothesis tests. This package performs nonparametric combination (Pesarin and Salmaso 2010), a permutation-based procedure for jointly testing multiple hypotheses. The tests are conducted under the global "sharp" null hypothesis of no effects, and the component tests are combined on the metric of their p-values. A key feature of nonparametric combination is that it accounts for the dependence among tests under the null hypothesis. In addition to the "NPC" function, which performs nonparametric combination itself, the package also contains a number of helper functions, many of which calculate a test statistic given an input of data.

Author
Devin Caughey [aut, cre]
Date of publication
2016-03-28 16:51:57
Maintainer
Devin Caughey <devin.caughey@gmail.com>
License
GPL-3
Version
1.1.0

View on CRAN

Man pages

DiffMeans
Differences of Means Test Statistic
DiffSumObs
Difference in the Number of Non-Missing Responses
DiffSumWithNA
Sum Test Statistic for MCAR Data
FWE
FWE Adjustment Using Closed Testing or Stepdown MinP
HarmonicWtdMean
Block-Specific Mean Differences Weighted by Harmonic Mean...
HoggAdapt
Adaptive Choice of Rank-Based Test Statistic
KS
Kolmogorov-Smirnov Test Statistic
LogRank
Log-Rank Test Statistic
MinimumCF
Tippett's Minimum Combining Function
NormalCF
Liptak's Normal Combining Function
NPC
Nonparametric Combination of Dependent Hypothesis Tests
open01
Map P-Values to Open Unit Interval
ProductCF
Fisher's Product Combining Function
RankSum
Wilcoxon's Rank-Sum Statistic
RankSumWithNA
Rank-Sum Test Statistic for MCAR Data
StudentsT
Student's T Statistic
StudentWilcoxon
Studentized Wilcoxon Rank-Sum Statistic
t2p
Convert Test Statistics into P-Values

Files in this package

NPC
NPC/NAMESPACE
NPC/NEWS.md
NPC/R
NPC/R/HoggAdapt.R
NPC/R/NormalCF.R
NPC/R/StudentWilcoxon.R
NPC/R/DiffSumObs.R
NPC/R/StudentsT.R
NPC/R/RankSum.R
NPC/R/KS.R
NPC/R/MinimumCF.R
NPC/R/DiffSumWithNA.R
NPC/R/t2p.R
NPC/R/NPC.R
NPC/R/RankSumWithNA.R
NPC/R/ProductCF.R
NPC/R/LogRank.R
NPC/R/DiffMeans.R
NPC/R/HarmonicWtdMean.R
NPC/R/open01.R
NPC/R/FWE.R
NPC/README.md
NPC/MD5
NPC/DESCRIPTION
NPC/man
NPC/man/ProductCF.Rd
NPC/man/HarmonicWtdMean.Rd
NPC/man/t2p.Rd
NPC/man/KS.Rd
NPC/man/RankSum.Rd
NPC/man/FWE.Rd
NPC/man/DiffSumWithNA.Rd
NPC/man/MinimumCF.Rd
NPC/man/LogRank.Rd
NPC/man/StudentWilcoxon.Rd
NPC/man/DiffSumObs.Rd
NPC/man/StudentsT.Rd
NPC/man/DiffMeans.Rd
NPC/man/RankSumWithNA.Rd
NPC/man/open01.Rd
NPC/man/NormalCF.Rd
NPC/man/HoggAdapt.Rd
NPC/man/NPC.Rd