NeatMap: Non-clustered heatmap alternatives

NeatMap is a package to create heatmap like plots in 2 and 3 dimensions, without the need for cluster analysis. Like the heatmap, the plots created by NeatMap display both a dimensionally reduced representation of the data as well as the data itself. They are intended to be used in conjunction with dimensional reduction techniques such as PCA.

Author
Satwik Rajaram and Yoshi Oono
Date of publication
2014-07-29 08:05:12
Maintainer
Satwik Rajaram <satwik@gmail.com>
License
GPL-3
Version
0.3.6.2

View on CRAN

Man pages

circularmap
Heatmap arranged as an annular region
draw.dendrogram
Draws a dendrogram in 2d
draw.dendrogram3d
Draws a dendrogram in 3d
heatmap1
Make a non-clustered heatmap
lineplot
Line plots of profiles in a grid of embedded results
NeatMap-package
Non-clustered Heatmaps
nMDS
non-Metric Multi-Dimensional Scaling
profileplot3d
Make a 3D rotatable plot showing data profiles
stereo.profileplot3d
Make a Stereo rotatable plot showing data profiles

Files in this package

NeatMap
NeatMap/src
NeatMap/src/nMDS_R.h
NeatMap/src/nMDS_R.cc
NeatMap/NAMESPACE
NeatMap/R
NeatMap/R/Heatmap1.R
NeatMap/R/Stereo.R
NeatMap/R/nMDS.R
NeatMap/R/LinePlot.R
NeatMap/R/ProfilePlot3D.R
NeatMap/R/Dendrogram3D.R
NeatMap/R/CircularPlot.R
NeatMap/MD5
NeatMap/DESCRIPTION
NeatMap/man
NeatMap/man/draw.dendrogram3d.Rd
NeatMap/man/stereo.profileplot3d.Rd
NeatMap/man/draw.dendrogram.Rd
NeatMap/man/heatmap1.Rd
NeatMap/man/lineplot.Rd
NeatMap/man/circularmap.Rd
NeatMap/man/profileplot3d.Rd
NeatMap/man/nMDS.Rd
NeatMap/man/NeatMap-package.Rd