plot_performance: A plot method combining a time series of performance results.

In NetOrigin: Origin Estimation for Propagation Processes on Complex Networks

A plot method combining a time series of performance results.

Description

A plot method combining a time series of performance results.

Usage

plot_performance(
  x,
  var = "rank",
  add = FALSE,
  offset = NULL,
  log = FALSE,
  col = 1,
  ylim = NULL,
  text.padding = 0.9,
  ...
)

Arguments

x	data.frame obtained by combined results from performance.origin with variables X1 for time point, start for true origin, est for estimated origin, and performance variables
var	character, variable to be plotted, performance.origin returns rank, spj, and dist, default is 'rank'
add	logical, should be added to another performance plot
offset	POSIXct, starting time of spreading
log	logical, should y-axis be logarithmized?
col	numeric or character, color of lines
ylim	numeric vector, range of y axis
text.padding	a numeric value specifying the factor for the text position relative to the y values
...	further graphical parameters passed to default plot function

Examples

## Not run:  
### delays on Goettingen bus network
# compute effective distance
data(ptnGoe)
goenet <- igraph::as_adjacency_matrix(ptnGoe, sparse=FALSE)
p <- goenet/rowSums(goenet)
eff <- eff_dist(p)
# apply source estimation
data(delayGoe)
if (requireNamespace("aplyr", quietly = TRUE)) {
   res <- alply(.data=delayGoe[11:20,-c(1:2)], .margins=1, .fun=origin_edm, 
                distance=eff, silent=TRUE, .progress='text')
   perfGoe <- ldply(Map(performance, x = res, start = 2, list(graph = ptnGoe)))
   # performance plots
   plot_performance(perfGoe, var='rank', ylab='rank of correct detection', text.padding=0.5)
   plot_performance(perfGoe, var='dist', ylab='distance to correct detection')
}

### delays on Athens metro network
# compute effective distance
data(ptnAth)
athnet <- igraph::as_adjacency_matrix(ptnAth, sparse=FALSE)
p <- athnet/rowSums(athnet)
eff <- eff_dist(p)
# apply source estimation
data(delayAth)
if (requireNamespace("aplyr", quietly = TRUE)) {
   res <- alply(.data=delayAth[11:20,-c(1:2)], .margins=1, .fun=origin_edm, 
             distance=eff, silent=TRUE, .progress='text')
   perfAth <- ldply(Map(performance, x = res, start = as.list(delayAth$k0),
                     list(graph = ptnAth)))
   # performance plots
   plot_performance(perfAth, var='rank', ylab='rank of correct detection',text.padding=0.5)
   plot_performance(perfAth, var='dist', ylab='distance to correct detection')
}

## End(Not run)

NetOrigin documentation built on Sept. 8, 2023, 5:58 p.m.