mpoxdat: mpoxdat: Mpox reporting data from the 2022 New York City...

In NobBS: Nowcasting by Bayesian Smoothing

mpoxdat: Mpox reporting data from the 2022 New York City Outbreak

Description

Surveillance line list data provided by the New York City (NYC) Health Department at https://github.com/nychealth/mpox_nowcast_eval, to accompany a nowcasting performance evaluation (doi: 10.2196/56495). Patients with a confirmed or probable mpox diagnosis or illness onset from July 8 through September 30, 2022 were included. The dataset contains 3323 rows and 4 columns. The first column, dx_date, is the specimen collection date of the first positive mpox laboratory result. The second column, dx_report_date, is the date the report of first positive mpox laboratory result was received by the NYC Health Department. The third column, onset_date, is the mpox symptom onset date. The fourth column, onset_report_date, is the date symptom onset date was received by the NYC Health Department.

Usage

data(mpoxdat)

Format

A data frame.

Examples

data(mpoxdat)
nowcast <- NobBS(mpoxdat, as.Date("2022-08-31"),units="1 day",onset_date="dx_date",
report_date="dx_report_date",moving_window=14)
nowcast$estimates

NobBS documentation built on June 8, 2025, 11:44 a.m.