2021-07-27
Added the following reference to CITATION, manuals and vignettes: https://doi.org/10.1109/TCBB.2021.3077573
2021-01-02 1. Version 0.0.4 was created from version 0.0.3.
2020-12-16
Included a missing header "cmath" that caused the package 0.0.2 fail to build for Flavor r-oldrel-macos-x86_64.
2020-12-15 1. Updated DESCRIPTION. 2. Replaced a hardcoded infinity by numeric_limits::infinity() in OptFramedClust.cpp.
2020-12-13 1. Version 0.0.3 was created from version 0.0.2
2020-12-12
Updated vignettes and manuals.
2020-12-09
Version 0.0.2 was created from version 0.0.1
2020-12-07
par()
function.
This will give the user full control of graphic parameters.
Updated the function's manual, examples, and related vignettes. Changed package title.
2020-12-04
Included with the package a FASTA file downloaded from GenBank accession number CP019943.1, representing the circular genome of Candidatus Carsonella ruddii, used in the vignette "Circular genome clustering".
2020-12-03
Fixed issues with example(FramedClust).
Optimized plot.CirClust output
2020-12-01 1. Fixed an issue where FramedClust crashed if the first.frame is not 1. E.g., FramedClust(1:10, 2, 4, 2, 7) FramedClust(1:10, 2, 4, 2, 6)
2020-11-30
The orange arrows in the "Circular genome clustering" vignette are visible now.
Changed the frame.width argument in FramedClust function to frame.size, to reduce potential confusion.
2020-11-29
In FramedClust, replaced the default last.frame = length(X)-frame.width by last.frame = length(X)-frame.width+1,
Replaced the circular data examples in plot.FramedClust
Updated the FramedClust() manual.
2020-11-24
Updated the package title and description.
2020-10-06
Created a unified function for framed clustering FramedClust( X, K, frame.width, first.frame = 1, last.frame = length(X)-frame.width+1, method = c("linear.polylog", "kmeans", "Ckmeans.1d.dp") )
2020-09-13
Tested the kmeans.framed.clust() function.
2020-08-11
Package name changed to OptCirClust to avoid confusion with a similar R package.
2020-08-10
Added more tests for function CirClust(), such as irregular input data.
Corrected the mean in OCC.
2020-08-08
Created CirClust version 0.0.1 from optCclust version 0.1.0
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