OptimalCutpoints: Computing optimal cutpoints in diagnostic tests

This package enables users to compute one or more optimal cutpoints for diagnostic tests or continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based on cost-benefit analysis and diagnostic test accuracy measures (Sensitivity/Specificity, Predictive Values and Diagnostic Likelihood Ratios). Numerical and graphical output for all methods is easily obtained.

AuthorMonica Lopez-Raton, Maria Xose Rodriguez-Alvarez
Date of publication2014-11-02 12:38:49
MaintainerMonica Lopez Raton <monica.lopez.raton@gmail.com>
LicenseGPL
Version1.1-3

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Files

OptimalCutpoints
OptimalCutpoints/inst
OptimalCutpoints/inst/CITATION
OptimalCutpoints/NAMESPACE
OptimalCutpoints/NEWS
OptimalCutpoints/data
OptimalCutpoints/data/elas.rda
OptimalCutpoints/R
OptimalCutpoints/R/print.optimal.cutpoints.R OptimalCutpoints/R/function.ROC01.R OptimalCutpoints/R/function.NPVEqualPPV.R OptimalCutpoints/R/function.MinValueSp.R OptimalCutpoints/R/function.ValueDLR.Negative.R OptimalCutpoints/R/function.SpEqualSe.R OptimalCutpoints/R/function.MaxProdSpSe.R OptimalCutpoints/R/optimal.cutpoints.default.R OptimalCutpoints/R/function.CB.R OptimalCutpoints/R/ci.RubinSchenker.R OptimalCutpoints/R/confidence.intervals.R OptimalCutpoints/R/optimal.cutpoints.formula.R OptimalCutpoints/R/calculate.empirical.AUC.R OptimalCutpoints/R/print.summary.optimal.cutpoints.R OptimalCutpoints/R/function.PROC01.R OptimalCutpoints/R/function.ObservedPrev.R OptimalCutpoints/R/function.MaxSe.R OptimalCutpoints/R/function.ValueSp.R OptimalCutpoints/R/control.cutpoints.R OptimalCutpoints/R/function.ValueDLR.Positive.R OptimalCutpoints/R/function.MinValuePPV.R OptimalCutpoints/R/calculate.sample.prev.R OptimalCutpoints/R/function.MinPvalue.R OptimalCutpoints/R/function.Youden.R OptimalCutpoints/R/function.MaxKappa.R OptimalCutpoints/R/validate.prevalence.R OptimalCutpoints/R/calculate.accuracy.measures.R OptimalCutpoints/R/function.ValueNPV.R OptimalCutpoints/R/ci.NotTransformed.R OptimalCutpoints/R/function.ValuePPV.R OptimalCutpoints/R/function.MaxEfficiency.R OptimalCutpoints/R/ci.GartNam.R OptimalCutpoints/R/function.MaxSp.R OptimalCutpoints/R/function.MinValueNPVPPV.R OptimalCutpoints/R/function.MaxSumNPVPPV.R OptimalCutpoints/R/plot.optimal.cutpoints.R OptimalCutpoints/R/optimal.cutpoints.R OptimalCutpoints/R/function.MeanPrev.R OptimalCutpoints/R/function.MinValueSpSe.R OptimalCutpoints/R/summary.optimal.cutpoints.R OptimalCutpoints/R/function.MinValueSe.R OptimalCutpoints/R/function.ValueSe.R OptimalCutpoints/R/ci.transformed.R OptimalCutpoints/R/function.MaxDOR.R OptimalCutpoints/R/ci.quadratic.R OptimalCutpoints/R/function.MaxSpSe.R OptimalCutpoints/R/function.MaxProdNPVPPV.R OptimalCutpoints/R/function.MCT.R OptimalCutpoints/R/ci.wald.R OptimalCutpoints/R/function.MinValueNPV.R OptimalCutpoints/R/function.PrevalenceMatching.R OptimalCutpoints/R/obtain.optimal.measures.R OptimalCutpoints/R/ci.exact.R OptimalCutpoints/R/function.Minimax.R OptimalCutpoints/R/function.MaxNPVPPV.R OptimalCutpoints/R/ci.AgrestiCoull.R
OptimalCutpoints/MD5
OptimalCutpoints/DESCRIPTION
OptimalCutpoints/man
OptimalCutpoints/man/elas.Rd OptimalCutpoints/man/summary.optimal.cutpoints.Rd OptimalCutpoints/man/optimal.cutpoints.Rd OptimalCutpoints/man/control.cutpoints.Rd OptimalCutpoints/man/OptimalCutpoints-package.Rd OptimalCutpoints/man/print.optimal.cutpoints.Rd OptimalCutpoints/man/plot.optimal.cutpoints.Rd

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