OptimalCutpoints: Computing optimal cutpoints in diagnostic tests
Version 1.1-3

This package enables users to compute one or more optimal cutpoints for diagnostic tests or continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based on cost-benefit analysis and diagnostic test accuracy measures (Sensitivity/Specificity, Predictive Values and Diagnostic Likelihood Ratios). Numerical and graphical output for all methods is easily obtained.

AuthorMonica Lopez-Raton, Maria Xose Rodriguez-Alvarez
Date of publication2014-11-02 12:38:49
MaintainerMonica Lopez Raton <monica.lopez.raton@gmail.com>
LicenseGPL
Version1.1-3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("OptimalCutpoints")

Getting started

Package overview

Popular man pages

control.cutpoints: Controlling the optimal-cutpoint selection process
elas: Leukocyte Elastase Data
optimal.cutpoints: Computing Optimal Cutpoints in diagnostic tests
OptimalCutpoints-package: Computing Optimal Cutpoints in diagnostic tests
plot.optimal.cutpoints: Default optimal.cutpoints plotting
print.optimal.cutpoints: Print method for optimal.cutpoints objects
summary.optimal.cutpoints: Summary method for optimal.cutpoints objects
See all...

All man pages Function index File listing

Man pages

control.cutpoints: Controlling the optimal-cutpoint selection process
elas: Leukocyte Elastase Data
optimal.cutpoints: Computing Optimal Cutpoints in diagnostic tests
OptimalCutpoints-package: Computing Optimal Cutpoints in diagnostic tests
plot.optimal.cutpoints: Default optimal.cutpoints plotting
print.optimal.cutpoints: Print method for optimal.cutpoints objects
summary.optimal.cutpoints: Summary method for optimal.cutpoints objects

Functions

OptimalCutpoints Man page
OptimalCutpoints-package Man page
calculate.accuracy.measures Source code
calculate.empirical.AUC Source code
calculate.sample.prev Source code
ci.AgrestiCoull Source code
ci.GartNam Source code
ci.NotTransformed Source code
ci.RubinSchenker Source code
ci.exact Source code
ci.quadratic Source code
ci.transformed Source code
ci.wald Source code
confidence.intervals Source code
control.cutpoints Man page Source code
elas Man page
function.CB Source code
function.MCT Source code
function.MaxDOR Source code
function.MaxEfficiency Source code
function.MaxKappa Source code
function.MaxNPVPPV Source code
function.MaxProdNPVPPV Source code
function.MaxProdSpSe Source code
function.MaxSe Source code
function.MaxSp Source code
function.MaxSpSe Source code
function.MaxSumNPVPPV Source code
function.MeanPrev Source code
function.MinPvalue Source code
function.MinValueNPV Source code
function.MinValueNPVPPV Source code
function.MinValuePPV Source code
function.MinValueSe Source code
function.MinValueSp Source code
function.MinValueSpSe Source code
function.Minimax Source code
function.NPVEqualPPV Source code
function.ObservedPrev Source code
function.PROC01 Source code
function.PrevalenceMatching Source code
function.ROC01 Source code
function.SpEqualSe Source code
function.ValueDLR.Negative Source code
function.ValueDLR.Positive Source code
function.ValueNPV Source code
function.ValuePPV Source code
function.ValueSe Source code
function.ValueSp Source code
function.Youden Source code
obtain.optimal.measures Source code
optimal.cutpoints Man page Source code
optimal.cutpoints.default Man page Source code
optimal.cutpoints.formula Man page Source code
plot.optimal.cutpoints Man page Source code
print.optimal.cutpoints Man page Source code
print.summary.optimal.cutpoints Source code
summary.optimal.cutpoints Man page Source code
validate.prevalence Source code

Files

inst
inst/CITATION
NAMESPACE
NEWS
data
data/elas.rda
R
R/print.optimal.cutpoints.R
R/function.ROC01.R
R/function.NPVEqualPPV.R
R/function.MinValueSp.R
R/function.ValueDLR.Negative.R
R/function.SpEqualSe.R
R/function.MaxProdSpSe.R
R/optimal.cutpoints.default.R
R/function.CB.R
R/ci.RubinSchenker.R
R/confidence.intervals.R
R/optimal.cutpoints.formula.R
R/calculate.empirical.AUC.R
R/print.summary.optimal.cutpoints.R
R/function.PROC01.R
R/function.ObservedPrev.R
R/function.MaxSe.R
R/function.ValueSp.R
R/control.cutpoints.R
R/function.ValueDLR.Positive.R
R/function.MinValuePPV.R
R/calculate.sample.prev.R
R/function.MinPvalue.R
R/function.Youden.R
R/function.MaxKappa.R
R/validate.prevalence.R
R/calculate.accuracy.measures.R
R/function.ValueNPV.R
R/ci.NotTransformed.R
R/function.ValuePPV.R
R/function.MaxEfficiency.R
R/ci.GartNam.R
R/function.MaxSp.R
R/function.MinValueNPVPPV.R
R/function.MaxSumNPVPPV.R
R/plot.optimal.cutpoints.R
R/optimal.cutpoints.R
R/function.MeanPrev.R
R/function.MinValueSpSe.R
R/summary.optimal.cutpoints.R
R/function.MinValueSe.R
R/function.ValueSe.R
R/ci.transformed.R
R/function.MaxDOR.R
R/ci.quadratic.R
R/function.MaxSpSe.R
R/function.MaxProdNPVPPV.R
R/function.MCT.R
R/ci.wald.R
R/function.MinValueNPV.R
R/function.PrevalenceMatching.R
R/obtain.optimal.measures.R
R/ci.exact.R
R/function.Minimax.R
R/function.MaxNPVPPV.R
R/ci.AgrestiCoull.R
MD5
DESCRIPTION
man
man/elas.Rd
man/summary.optimal.cutpoints.Rd
man/optimal.cutpoints.Rd
man/control.cutpoints.Rd
man/OptimalCutpoints-package.Rd
man/print.optimal.cutpoints.Rd
man/plot.optimal.cutpoints.Rd
OptimalCutpoints documentation built on May 19, 2017, 1:22 p.m.

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