This package enables users to compute one or more optimal cutpoints for diagnostic tests or continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based on cost-benefit analysis and diagnostic test accuracy measures (Sensitivity/Specificity, Predictive Values and Diagnostic Likelihood Ratios). Numerical and graphical output for all methods is easily obtained.

Author | Monica Lopez-Raton, Maria Xose Rodriguez-Alvarez |

Date of publication | 2014-11-02 12:38:49 |

Maintainer | Monica Lopez Raton <monica.lopez.raton@gmail.com> |

License | GPL |

Version | 1.1-3 |

**control.cutpoints:** Controlling the optimal-cutpoint selection process

**elas:** Leukocyte Elastase Data

**optimal.cutpoints:** Computing Optimal Cutpoints in diagnostic tests

**OptimalCutpoints-package:** Computing Optimal Cutpoints in diagnostic tests

**plot.optimal.cutpoints:** Default optimal.cutpoints plotting

**print.optimal.cutpoints:** Print method for optimal.cutpoints objects

**summary.optimal.cutpoints:** Summary method for optimal.cutpoints objects

control.cutpoints | Man page |

elas | Man page |

optimal.cutpoints | Man page |

OptimalCutpoints | Man page |

optimal.cutpoints.default | Man page |

optimal.cutpoints.formula | Man page |

OptimalCutpoints-package | Man page |

plot.optimal.cutpoints | Man page |

print.optimal.cutpoints | Man page |

summary.optimal.cutpoints | Man page |

OptimalCutpoints

OptimalCutpoints/inst

OptimalCutpoints/inst/CITATION

OptimalCutpoints/NAMESPACE

OptimalCutpoints/NEWS

OptimalCutpoints/data

OptimalCutpoints/data/elas.rda

OptimalCutpoints/R

OptimalCutpoints/R/print.optimal.cutpoints.R
OptimalCutpoints/R/function.ROC01.R
OptimalCutpoints/R/function.NPVEqualPPV.R
OptimalCutpoints/R/function.MinValueSp.R
OptimalCutpoints/R/function.ValueDLR.Negative.R
OptimalCutpoints/R/function.SpEqualSe.R
OptimalCutpoints/R/function.MaxProdSpSe.R
OptimalCutpoints/R/optimal.cutpoints.default.R
OptimalCutpoints/R/function.CB.R
OptimalCutpoints/R/ci.RubinSchenker.R
OptimalCutpoints/R/confidence.intervals.R
OptimalCutpoints/R/optimal.cutpoints.formula.R
OptimalCutpoints/R/calculate.empirical.AUC.R
OptimalCutpoints/R/print.summary.optimal.cutpoints.R
OptimalCutpoints/R/function.PROC01.R
OptimalCutpoints/R/function.ObservedPrev.R
OptimalCutpoints/R/function.MaxSe.R
OptimalCutpoints/R/function.ValueSp.R
OptimalCutpoints/R/control.cutpoints.R
OptimalCutpoints/R/function.ValueDLR.Positive.R
OptimalCutpoints/R/function.MinValuePPV.R
OptimalCutpoints/R/calculate.sample.prev.R
OptimalCutpoints/R/function.MinPvalue.R
OptimalCutpoints/R/function.Youden.R
OptimalCutpoints/R/function.MaxKappa.R
OptimalCutpoints/R/validate.prevalence.R
OptimalCutpoints/R/calculate.accuracy.measures.R
OptimalCutpoints/R/function.ValueNPV.R
OptimalCutpoints/R/ci.NotTransformed.R
OptimalCutpoints/R/function.ValuePPV.R
OptimalCutpoints/R/function.MaxEfficiency.R
OptimalCutpoints/R/ci.GartNam.R
OptimalCutpoints/R/function.MaxSp.R
OptimalCutpoints/R/function.MinValueNPVPPV.R
OptimalCutpoints/R/function.MaxSumNPVPPV.R
OptimalCutpoints/R/plot.optimal.cutpoints.R
OptimalCutpoints/R/optimal.cutpoints.R
OptimalCutpoints/R/function.MeanPrev.R
OptimalCutpoints/R/function.MinValueSpSe.R
OptimalCutpoints/R/summary.optimal.cutpoints.R
OptimalCutpoints/R/function.MinValueSe.R
OptimalCutpoints/R/function.ValueSe.R
OptimalCutpoints/R/ci.transformed.R
OptimalCutpoints/R/function.MaxDOR.R
OptimalCutpoints/R/ci.quadratic.R
OptimalCutpoints/R/function.MaxSpSe.R
OptimalCutpoints/R/function.MaxProdNPVPPV.R
OptimalCutpoints/R/function.MCT.R
OptimalCutpoints/R/ci.wald.R
OptimalCutpoints/R/function.MinValueNPV.R
OptimalCutpoints/R/function.PrevalenceMatching.R
OptimalCutpoints/R/obtain.optimal.measures.R
OptimalCutpoints/R/ci.exact.R
OptimalCutpoints/R/function.Minimax.R
OptimalCutpoints/R/function.MaxNPVPPV.R
OptimalCutpoints/R/ci.AgrestiCoull.R
OptimalCutpoints/MD5

OptimalCutpoints/DESCRIPTION

OptimalCutpoints/man

OptimalCutpoints/man/elas.Rd
OptimalCutpoints/man/summary.optimal.cutpoints.Rd
OptimalCutpoints/man/optimal.cutpoints.Rd
OptimalCutpoints/man/control.cutpoints.Rd
OptimalCutpoints/man/OptimalCutpoints-package.Rd
OptimalCutpoints/man/print.optimal.cutpoints.Rd
OptimalCutpoints/man/plot.optimal.cutpoints.Rd
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