OptimalCutpoints: Computing optimal cutpoints in diagnostic tests

This package enables users to compute one or more optimal cutpoints for diagnostic tests or continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based on cost-benefit analysis and diagnostic test accuracy measures (Sensitivity/Specificity, Predictive Values and Diagnostic Likelihood Ratios). Numerical and graphical output for all methods is easily obtained.

Author
Monica Lopez-Raton, Maria Xose Rodriguez-Alvarez
Date of publication
2014-11-02 12:38:49
Maintainer
Monica Lopez Raton <monica.lopez.raton@gmail.com>
License
GPL
Version
1.1-3

View on CRAN

Man pages

control.cutpoints
Controlling the optimal-cutpoint selection process
elas
Leukocyte Elastase Data
optimal.cutpoints
Computing Optimal Cutpoints in diagnostic tests
OptimalCutpoints-package
Computing Optimal Cutpoints in diagnostic tests
plot.optimal.cutpoints
Default optimal.cutpoints plotting
print.optimal.cutpoints
Print method for optimal.cutpoints objects
summary.optimal.cutpoints
Summary method for optimal.cutpoints objects

Files in this package

OptimalCutpoints
OptimalCutpoints/inst
OptimalCutpoints/inst/CITATION
OptimalCutpoints/NAMESPACE
OptimalCutpoints/NEWS
OptimalCutpoints/data
OptimalCutpoints/data/elas.rda
OptimalCutpoints/R
OptimalCutpoints/R/print.optimal.cutpoints.R
OptimalCutpoints/R/function.ROC01.R
OptimalCutpoints/R/function.NPVEqualPPV.R
OptimalCutpoints/R/function.MinValueSp.R
OptimalCutpoints/R/function.ValueDLR.Negative.R
OptimalCutpoints/R/function.SpEqualSe.R
OptimalCutpoints/R/function.MaxProdSpSe.R
OptimalCutpoints/R/optimal.cutpoints.default.R
OptimalCutpoints/R/function.CB.R
OptimalCutpoints/R/ci.RubinSchenker.R
OptimalCutpoints/R/confidence.intervals.R
OptimalCutpoints/R/optimal.cutpoints.formula.R
OptimalCutpoints/R/calculate.empirical.AUC.R
OptimalCutpoints/R/print.summary.optimal.cutpoints.R
OptimalCutpoints/R/function.PROC01.R
OptimalCutpoints/R/function.ObservedPrev.R
OptimalCutpoints/R/function.MaxSe.R
OptimalCutpoints/R/function.ValueSp.R
OptimalCutpoints/R/control.cutpoints.R
OptimalCutpoints/R/function.ValueDLR.Positive.R
OptimalCutpoints/R/function.MinValuePPV.R
OptimalCutpoints/R/calculate.sample.prev.R
OptimalCutpoints/R/function.MinPvalue.R
OptimalCutpoints/R/function.Youden.R
OptimalCutpoints/R/function.MaxKappa.R
OptimalCutpoints/R/validate.prevalence.R
OptimalCutpoints/R/calculate.accuracy.measures.R
OptimalCutpoints/R/function.ValueNPV.R
OptimalCutpoints/R/ci.NotTransformed.R
OptimalCutpoints/R/function.ValuePPV.R
OptimalCutpoints/R/function.MaxEfficiency.R
OptimalCutpoints/R/ci.GartNam.R
OptimalCutpoints/R/function.MaxSp.R
OptimalCutpoints/R/function.MinValueNPVPPV.R
OptimalCutpoints/R/function.MaxSumNPVPPV.R
OptimalCutpoints/R/plot.optimal.cutpoints.R
OptimalCutpoints/R/optimal.cutpoints.R
OptimalCutpoints/R/function.MeanPrev.R
OptimalCutpoints/R/function.MinValueSpSe.R
OptimalCutpoints/R/summary.optimal.cutpoints.R
OptimalCutpoints/R/function.MinValueSe.R
OptimalCutpoints/R/function.ValueSe.R
OptimalCutpoints/R/ci.transformed.R
OptimalCutpoints/R/function.MaxDOR.R
OptimalCutpoints/R/ci.quadratic.R
OptimalCutpoints/R/function.MaxSpSe.R
OptimalCutpoints/R/function.MaxProdNPVPPV.R
OptimalCutpoints/R/function.MCT.R
OptimalCutpoints/R/ci.wald.R
OptimalCutpoints/R/function.MinValueNPV.R
OptimalCutpoints/R/function.PrevalenceMatching.R
OptimalCutpoints/R/obtain.optimal.measures.R
OptimalCutpoints/R/ci.exact.R
OptimalCutpoints/R/function.Minimax.R
OptimalCutpoints/R/function.MaxNPVPPV.R
OptimalCutpoints/R/ci.AgrestiCoull.R
OptimalCutpoints/MD5
OptimalCutpoints/DESCRIPTION
OptimalCutpoints/man
OptimalCutpoints/man/elas.Rd
OptimalCutpoints/man/summary.optimal.cutpoints.Rd
OptimalCutpoints/man/optimal.cutpoints.Rd
OptimalCutpoints/man/control.cutpoints.Rd
OptimalCutpoints/man/OptimalCutpoints-package.Rd
OptimalCutpoints/man/print.optimal.cutpoints.Rd
OptimalCutpoints/man/plot.optimal.cutpoints.Rd