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OriGen: Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
Used primarily for estimates of allele frequency surfaces from point estimates. It can also place individuals of unknown origin back onto the geographic map with great accuracy. Additionally, it can place admixed individuals by estimating contributing fractions at each location on a map. Lastly, it can rank SNPs by their ability to differentiate populations. See "Fast Spatial Ancestry via Flexible Allele Frequency Surfaces" (John Michael Ranola, John Novembre, Kenneth Lange) in Bioinformatics 2014 for more info.
Getting started
Browse package contents
Package details |
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| Author | John Michael O Ranola, John Novembre, and Kenneth Lange |
| Maintainer | John Michael O. Ranola <ranolaj@uw.edu> |
| License | GPL (>= 2) |
| Version | 1.4.3 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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Try the OriGen package in your browser
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