10SNPs.map | Plink sample PED data |
10SNPs.ped | Plink sample PED data |
CalcFractionsMultiLoglik | Calculates the loglikelihood for placing a sample 100 percent... |
ConvertMicrosatData | Microsatellite file conversion for known and unknown data |
ConvertPEDData | Plink PED file conversion |
ConvertUnknownPEDData | Plink PED file conversion for known and unknown data |
FindRhoParameterCrossValidation | Finds the appropriate value of the Rho parameter via... |
FitAdmixedModelFindUnknowns | Fit the OriGen model and place unknown individuals who may be... |
FitMultinomialAdmixedModelFindUnknowns | Fit the multinomial OriGen model and place unknown... |
FitMultinomialModel | Fit OriGen allele frequency surfaces |
FitMultinomialModelFindUnknowns | Fit OriGen microsatellite allele frequency surfaces |
FitOriGenModel | Fit OriGen allele frequency surfaces |
FitOriGenModelFindUnknowns | Fit the OriGen model and place unknown individuals |
GenerateHeatMaps | Fit OriGen microsatellite allele frequency surfaces |
Locations | Locations of individuals in 10SNPs |
LocationsTrialDataSmall | Locations of individuals in MicrosatTrialDataSmall |
MicrosatTrialDataSmall | Genotypes of individuals in located at... |
OriGen-package | Fast Spatial Ancestry via Flexible Allele Frequency Surfaces |
PlotAdmixedSurface | Plots admixture fraction results |
PlotAlleleFrequencySurface | Plots an OriGen fitted allele frequency surface |
PlotAlleleFrequencySurfaceOld | Plots an OriGen fitted allele frequency surface |
PlotUnknownHeatMap | Plots a heat map depicting the probability an unknown... |
RankSNPsLRT | Rank the SNPs based on the likelihood ratio test. |
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