Man pages for OriGen
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
| 10SNPs.map | Plink sample PED data |
| 10SNPs.ped | Plink sample PED data |
| CalcFractionsMultiLoglik | Calculates the loglikelihood for placing a sample 100 percent... |
| ConvertMicrosatData | Microsatellite file conversion for known and unknown data |
| ConvertPEDData | Plink PED file conversion |
| ConvertUnknownPEDData | Plink PED file conversion for known and unknown data |
| FindRhoParameterCrossValidation | Finds the appropriate value of the Rho parameter via... |
| FitAdmixedModelFindUnknowns | Fit the OriGen model and place unknown individuals who may be... |
| FitMultinomialAdmixedModelFindUnknowns | Fit the multinomial OriGen model and place unknown... |
| FitMultinomialModel | Fit OriGen allele frequency surfaces |
| FitMultinomialModelFindUnknowns | Fit OriGen microsatellite allele frequency surfaces |
| FitOriGenModel | Fit OriGen allele frequency surfaces |
| FitOriGenModelFindUnknowns | Fit the OriGen model and place unknown individuals |
| GenerateHeatMaps | Fit OriGen microsatellite allele frequency surfaces |
| Locations | Locations of individuals in 10SNPs |
| LocationsTrialDataSmall | Locations of individuals in MicrosatTrialDataSmall |
| MicrosatTrialDataSmall | Genotypes of individuals in located at... |
| OriGen-package | Fast Spatial Ancestry via Flexible Allele Frequency Surfaces |
| PlotAdmixedSurface | Plots admixture fraction results |
| PlotAlleleFrequencySurface | Plots an OriGen fitted allele frequency surface |
| PlotAlleleFrequencySurfaceOld | Plots an OriGen fitted allele frequency surface |
| PlotUnknownHeatMap | Plots a heat map depicting the probability an unknown... |
| RankSNPsLRT | Rank the SNPs based on the likelihood ratio test. |
