PCMMapModelTypesToRegimes: Integer vector giving the model type index for each regime

In PCMBase: Simulation and Likelihood Calculation of Phylogenetic Comparative Models

Integer vector giving the model type index for each regime

Description

Integer vector giving the model type index for each regime

Usage

PCMMapModelTypesToRegimes(model, tree, ...)

Arguments

model	a PCM model
tree	a phylo object with an edge.part member
...	additional parameters passed to methods

Details

This is a generic S3 method. The default implementation for the basic class PCM returns a vector of 1's, because it assumes that a single model type is associated with each regime. The implementation for mixed Gaussian models returns the mapping attribute of the MixedGaussian object reordered to correspond to PCMTreeGetPartNames(tree).

Value

an integer vector with elements corresponding to the elements in PCMTreeGetPartNames(tree)

PCMBase documentation built on Sept. 1, 2025, 5:11 p.m.