self.belonging: Degree of self belonging of species

In PCPS: Principal Coordinates of Phylogenetic Structure

Description

Define the degree of self belonging of species.

Usage

self.belonging(dis, standardize = TRUE)

Arguments

dis	Matrix containing distance between species.
standardize	Logical argument (TRUE or FALSE) to specify if dis must be standardize in values into range 0 from 1 (Default standardize = TRUE).

Details

For the calculation of self-belonging of a set of species the dissimilarities between the species are transformed into similarities and used to define degrees of belonging to fuzzy sets (Pillar et al. 2009; Pillar & Duarte 2010). Every species among all species specifies a fuzzy set in relation to all other species, with a certain degree of belonging. The self-belonging of a given species i expresses its degree of belonging to the root node of the phylogenetic/functional tree, conditioned to the similarities between i and all other internal nodes connecting it to the root.

Value

The self-belonging for each species.

Author(s)

Vanderlei Julio Debastiani <[e-mail]>

References

Pillar, V.D.; Duarte, L.d.S. (2010). A framework for metacommunity analysis of phylogenetic structure. Ecology Letters, 13, 587:596.

Pillar, V.D., Duarte, L.d.S., Sosinski, E.E. & Joner, F. (2009). Discriminating trait-convergence and trait-divergence assembly patterns in ecological community gradients. Journal of Vegetation Science, 20, 334:348.

See Also

belonging

Examples

data(ADRS)
self.belonging(ADRS$phylo)

PCPS documentation built on Jan. 16, 2020, 1:03 a.m.