Man pages for PKPDmisc
Pharmacokinetic and Pharmacodynamic Data Management Functions
| as_numeric | convert to numeric passing through character for safety |
| auc_inf | Calculate AUCt-inf |
| auc_partial | Calculate partial AUC |
| auc_partial_cpp | calculate partial AUC |
| basename_sans_ext | get the basename of a filepath, minus any extensions |
| base_theme | A theme with better default values for pharmacometric plots,... |
| bring_to_front | bring select columns to the front of a dataframe |
| calculate_wam | internal WAM function |
| capitalize_names | capitalize all names for a dataframe |
| capture_groups | wrapper to capture groups from a grouped data frame |
| char_to_numeric | convert all columns to numeric |
| chunk | split IDs into groups to use for subsequent plotting |
| chunk_df | chunk dataframes so easy to split for parallel processing |
| color_pallete | design-quality color palletes to use in ggplot2 |
| cols_to_factor | convert column to type factor |
| cols_to_numeric | convert column to type numeric |
| cor_to_cov | correlation to covariance matrix |
| cov_to_cor | covariance to correlation |
| dapa_IV_oral | IV and oral pharmacokinetic data for daptomycin |
| file_rows | count number of rows in a file without needing to read file... |
| fill_backward | given NA values fill them with the next non-na value |
| fill_forward | given NA values fill them with the final non-na value |
| has_ext | check for if the passed name has a file extension |
| is_dir | detect if a filepath is for a directory |
| jprint | print multiple values joined together |
| lowercase_names | lowercase all names for a dataframe |
| max_through | give the max value up to that point |
| min_through | give the min value up to that point |
| nca | calculate basic NCA parameters t1/2 Cl, Cmax etc |
| new_report | a better new rmd template for reports |
| nm_description | show description output from .mod file |
| nm_notes | show notes output from .mod file |
| nonmem_report | create basic folder structure for a nonmem report |
| ordinal_to_binary | convert a column of categorical covariates into a number of... |
| pad_left | add left padding to a vector of values |
| peek | peek at the results in a dplyr pipeline |
| phx_report | create basic folder structure for a phoenix report |
| pipe | Pipe operator |
| print_plots | create a list of plots cleanly with extra pdf functionality |
| read_nonmem | read nonmem files easily |
| read_phx | to more easily read data with a 2nd row with units common to... |
| rename_table_pattern | simple table name replacement for a given pattern |
| replace_dots | Convert '.' values into missing values. |
| replace_empty | Convert empty strings into missing values. |
| replace_from_template | replace values from a template file |
| replace_list_elements | replace list elements by name |
| replace_values | replace symbols or other character flags |
| resample_df | resampling |
| rf51_factory | factory to create read fort51 file |
| round_columns | round columns |
| sd_oral_richpk | One-compartment pharmacokinetic data given single oral dose |
| set_bins | given a set of bin ranges, assign each value to a bin |
| set_bins_cpp | given a set of bin ranges, assign each value to a bin |
| set_bins_df | given a set of bin ranges, assign each value to a bin and... |
| set_groups | set groups |
| s_pauc | summarize paucs |
| s_quantiles | summarize quantiles for a column |
| strip_attributes | strip additional attributes that make dplyr fail |
| strip_curves | basic curve stripping to get initial estimates |
| unique_non_numerics | find all unique non-numeric values |
| view_creator | create view commands that save rds files to where a shiny app... |
| wam | wam function |
| write_nonmem | easily write a csv file compatible with nonmem |
