get_response_plot: Plot the response column diagram

In PMAPscore: Identify Prognosis-Related Pathways Altered by Somatic Mutation

Plot the response column diagram

Description

The function 'get_response_plot' uses to plot the column diagram of drug response.

Usage

get_response_plot(km_data, response, cut_point, TRAIN = TRUE)

Arguments

km_data	A data frame, including survival status, survival time, and risk score of each sample. The data frame can be generated by the function 'get_risk_score'.
response	Response status of the sample to the drug.
cut_point	The threshold uses to classify patients into two subgroups with different OS.
TRAIN	Logical,if set to TRUE,the 'cut_point' is generated by the median of the risk score; Otherwise,'cut_point' can be customized.

Value

Comparison of the objective response rate between the high-risk and low-risk groups, plot the bar graph and return the p value.

Examples

#Load the data.
data(km_data,response)
#perform the function `get_response_plot`.
get_response_plot(km_data,response,cut_point,TRAIN=TRUE)

PMAPscore documentation built on April 12, 2022, 9:06 a.m.