phylolm_summary: Wrapper for running phylogenetic regression with phylolm

In POMS: Phylogenetic Organization of Metagenomic Signals

Wrapper for running phylogenetic regression with phylolm

Description

Runs basic case of single x and y variables (dummy or continuous). Note that the ordering of the input vectors and the tree tip labels needs to be checked by the user beforehand: this script does not require that the y and x variables are named, and so no name check is performed.

Usage

phylolm_summary(y, x, in_tree, model_type = "BM")

Arguments

y	variable to use for y component of model.
x	variable to use for x component of model.
in_tree	phylo object. Tip label order is assumed to match the y and x variables.
model_type	length-one character vector specifying which phylogenetic model to use (must be a possible setting of the model argument to the phylolm function).

Value

Numeric vector of length three, providing the estimated coefficients for the intercept and slope, along with the p-value.

POMS documentation built on Dec. 16, 2022, 5:08 p.m.