ExampleBSseq: BSseq example dataset
In PQLseq: Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies
Description
Usage
Format
Examples
Description
A simulated example dataset of BSseq for PQLseq.
Usage
1
Format
Contains the following objects:
- mcount
a data frame containing the read counts for 5 sites.
- predictor
a vector of 100 observations on a continuous variable.
- relatednessmatrix
a genetic relationship matrix for 100 individuals.
- totalcount
a data frame containing the total read counts for 5 sites.
Examples
1
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5
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7
data(ExampleBSseq)
attach(ExampleBSseq)
model_DNA=pqlseq(RawCountDataSet=mcount, Phenotypes=predictor,
RelatednessMatrix=relatednessmatrix, LibSize=totalcount,
fit.model="BMM",numCore=1)
head(model_DNA)
detach(ExampleBSseq)
PQLseq documentation built on June 6, 2021, 5:06 p.m.
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Description Usage Format Examples
Description
A simulated example dataset of BSseq for PQLseq.
Usage
1 |
Format
Contains the following objects:
- mcount
a data frame containing the read counts for 5 sites.
- predictor
a vector of 100 observations on a continuous variable.
- relatednessmatrix
a genetic relationship matrix for 100 individuals.
- totalcount
a data frame containing the total read counts for 5 sites.
Examples
1 2 3 4 5 6 7 | data(ExampleBSseq)
attach(ExampleBSseq)
model_DNA=pqlseq(RawCountDataSet=mcount, Phenotypes=predictor,
RelatednessMatrix=relatednessmatrix, LibSize=totalcount,
fit.model="BMM",numCore=1)
head(model_DNA)
detach(ExampleBSseq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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