Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data

calc.grad.list | calc grad list |

calc.loss.from.lp.list | calc loss from lp list |

calc.loss.list | calc loss list |

cDPA | cDPA |

chr11ChIPseq | ChIP-seq aligned read coverage for 4 samples on a subset of... |

chr11first | Counts of first base of aligned reads |

derivs | derivs |

GeomTallRect | GeomTallRect |

getPath | getPath |

H3K36me3.AM.immune.19 | Several ChIP-seq profiles, some of which have few data points |

H3K36me3.TDH.other.chunk3.cluster4 | 8 profiles of H3K36me3 data |

H3K4me3.TDH.immune.chunk12.cluster4 | Histone ChIP-seq data, 26 samples, chr1 subset |

PeakSegDP | PeakSegDP |

phi.list | phi list |

PoissonLoss | PoissonLoss |

regression.funs | regression funs |

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