HornedLizard_Pop: A population assignment data frame to be used in...
In PopGenHelpR: Streamline Population Genomic and Genetic Analyses
HornedLizard_Pop R Documentation
A population assignment data frame to be used in Heterozygosity and Differentiation.
Description
Data frame containing 4 columns and 72 rows
Usage
data(HornedLizard_Pop)
Format
A data frame with 4 columns and 72 rows:
- Sample
Sample Name
- Population
Population assignment according to sNMF results (see citation)
- Longitude
Longitude
- Latitude
Latitude
...
Source
Coordinates and population names taken from Farleigh, K., Vladimirova, S. A., Blair, C., Bracken, J. T., Koochekian, N., Schield, D. R., ... & Jezkova, T. (2021). The effects of climate and demographic history in shaping genomic variation across populations of the Desert Horned Lizard (Phrynosoma platyrhinos). Molecular Ecology, 30(18), 4481-4496.
Examples
data("HornedLizard_Pop")
data("HornedLizard_VCF")
Test <- Differentiation(data = HornedLizard_VCF, pops = HornedLizard_Pop, write = FALSE)
PopGenHelpR documentation built on Sept. 11, 2024, 7:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| HornedLizard_Pop | R Documentation |
A population assignment data frame to be used in Heterozygosity and Differentiation.
Description
Data frame containing 4 columns and 72 rows
Usage
data(HornedLizard_Pop)
Format
A data frame with 4 columns and 72 rows:
- Sample
Sample Name
- Population
Population assignment according to sNMF results (see citation)
- Longitude
Longitude
- Latitude
Latitude
...
Source
Coordinates and population names taken from Farleigh, K., Vladimirova, S. A., Blair, C., Bracken, J. T., Koochekian, N., Schield, D. R., ... & Jezkova, T. (2021). The effects of climate and demographic history in shaping genomic variation across populations of the Desert Horned Lizard (Phrynosoma platyrhinos). Molecular Ecology, 30(18), 4481-4496.
Examples
data("HornedLizard_Pop")
data("HornedLizard_VCF")
Test <- Differentiation(data = HornedLizard_VCF, pops = HornedLizard_Pop, write = FALSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.