Description Usage Arguments Details Value Author(s) References See Also
This function computes the PIC (Botstein et al. 1980) of each locus.
1 | PICalc(datafile, ndigit = 3)
|
datafile |
Name of the input file, with the extension (e.g. 'glyptemys3.arp') |
ndigit |
Number of digit per allele in the input file. Default is 3. |
Some .arp files might not be imported correctly depending on which software was used to generate them. If this is the case, start from the Genepop file and convert it first with convert
.
Returns a table of PIC values to the R console.
Sebastien Rioux Paquette
Botstein, D., R.L. White, M. Skolnick, and A.W. Davis (1980). Construction of a Genetic Linkage Map in Man Using Restriction Fragment Length Polymorphisms. Am. J. Hum. Genet. 32: 314-331.
Excoffier, L. and H.E.L. Lischer (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Res. 10: 564-567.
Rousset, F. (2008). Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Res. 8: 103-106.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.