PICalc: Compute the polymorphism infomration content (PIC) of each...
In PopGenKit: Useful functions for (batch) file conversion and data resampling in microsatellite datasets
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Description
This function computes the PIC (Botstein et al. 1980) of each locus.
Usage
1
PICalc(datafile, ndigit = 3)
Arguments
datafile
Name of the input file, with the extension (e.g. 'glyptemys3.arp')
ndigit
Number of digit per allele in the input file. Default is 3.
Details
Some .arp files might not be imported correctly depending on which software was used to generate them. If this is the case, start from the Genepop file and convert it first with convert.
Value
Returns a table of PIC values to the R console.
Author(s)
Sebastien Rioux Paquette
References
Botstein, D., R.L. White, M. Skolnick, and A.W. Davis (1980). Construction of a Genetic Linkage Map in Man Using Restriction Fragment Length Polymorphisms. Am. J. Hum. Genet. 32: 314-331.
Excoffier, L. and H.E.L. Lischer (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Res. 10: 564-567.
Rousset, F. (2008). Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Res. 8: 103-106.
See Also
PopGenKit documentation built on May 2, 2019, 3:33 p.m.
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Description Usage Arguments Details Value Author(s) References See Also
Description
This function computes the PIC (Botstein et al. 1980) of each locus.
Usage
1 | PICalc(datafile, ndigit = 3)
|
Arguments
datafile |
Name of the input file, with the extension (e.g. 'glyptemys3.arp') |
ndigit |
Number of digit per allele in the input file. Default is 3. |
Details
Some .arp files might not be imported correctly depending on which software was used to generate them. If this is the case, start from the Genepop file and convert it first with convert.
Value
Returns a table of PIC values to the R console.
Author(s)
Sebastien Rioux Paquette
References
Botstein, D., R.L. White, M. Skolnick, and A.W. Davis (1980). Construction of a Genetic Linkage Map in Man Using Restriction Fragment Length Polymorphisms. Am. J. Hum. Genet. 32: 314-331.
Excoffier, L. and H.E.L. Lischer (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Res. 10: 564-567.
Rousset, F. (2008). Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Res. 8: 103-106.
See Also
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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