PopVar: Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation
Version 1.2.1

The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015). Crop Sci. doi:10.2135/cropsci2015.01.0030. A dataset 'think_barley.rda' is included for reference and examples.

Browse man pages Browse package API and functions Browse package files

AuthorTyler Tiede [aut, cre], Mohsen Mohammadi [ctb], Kevin P. Smith [ctb]
Date of publication2015-07-08 14:46:25
MaintainerTyler Tiede <tyler.tiede7@gmail.com>
LicenseGPL-3
Version1.2.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("PopVar")

Man pages

pop.predict: A genome-wide procedure for predicting genetic variance and...
PopVar-package: Genomic breeding tools to 1) predict standard statistics and...
think_barley.rda: An example barley dataset
x.val: Estimate genome-wide prediction accuacy using...

Functions

G.in_ex Man page
PopVar Man page
PopVar-package Man page
XValidate.Ind Source code
XValidate.nonInd Source code
cross.tab_ex Man page
maf.filt Source code
map.in_ex Man page
par.name Source code
par.position Source code
pop.predict Man page Source code
tails Source code
think_barley.rda Man page
x.val Man page Source code
y.in_ex Man page

Files

NAMESPACE
data
data/think_barley.rda
R
R/XValidate_Ind_function_4.28.15.R
R/Internal_PopVar_functions_4.28.15.R
R/pop.predict_function_4.28.15.R
R/XValidate.nonInd_function_4.28.15.R
R/PopVar-package.R
R/x.val_function_4.28.15.R
R/think_barley_dataset.R
MD5
DESCRIPTION
man
man/x.val.Rd
man/think_barley.rda.Rd
man/pop.predict.Rd
man/PopVar-package.Rd
PopVar documentation built on May 19, 2017, 1:17 p.m.