PresenceAbsence: Presence-Absence Model Evaluation.

This package provides a set of functions useful when evaluating the results of presence-absence models. Package includes functions for calculating threshold dependent measures such as confusion matrices, pcc, sensitivity, specificity, and Kappa, and produces plots of each measure as the threshold is varied. It will calculate optimal threshold choice according to a choice of optimization criteria. It also includes functions to plot the threshold independent ROC curves along with the associated AUC (area under the curve).

AuthorElizabeth Freeman
Date of publication2012-08-17 18:47:44
MaintainerElizabeth Freeman <eafreeman@fs.fed.us>
LicenseUnlimited
Version1.1.9

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Files

PresenceAbsence
PresenceAbsence/MD5
PresenceAbsence/R
PresenceAbsence/R/specificity.R PresenceAbsence/R/sensitivity.R PresenceAbsence/R/roc.plot.calculate.R PresenceAbsence/R/presence.absence.summary.R PresenceAbsence/R/presence.absence.simulation.R PresenceAbsence/R/presence.absence.hist.R PresenceAbsence/R/presence.absence.accuracy.R PresenceAbsence/R/predicted.prevalence.R PresenceAbsence/R/pcc.R PresenceAbsence/R/optimal.thresholds.R PresenceAbsence/R/Kappa.R PresenceAbsence/R/error.threshold.plot.R PresenceAbsence/R/cmx.R PresenceAbsence/R/calibration.plot.R PresenceAbsence/R/auc.roc.plot.R PresenceAbsence/R/auc.R
PresenceAbsence/NAMESPACE
PresenceAbsence/man
PresenceAbsence/man/SPPREV.Rd PresenceAbsence/man/specificity.Rd PresenceAbsence/man/SPDATA.Rd PresenceAbsence/man/SIM3DATA.Rd PresenceAbsence/man/sensitivity.Rd PresenceAbsence/man/roc.plot.calculate.Rd PresenceAbsence/man/PresenceAbsence.package.Rd PresenceAbsence/man/presence.absence.summary.Rd PresenceAbsence/man/presence.absence.simulation.Rd PresenceAbsence/man/presence.absence.hist.Rd PresenceAbsence/man/presence.absence.accuracy.Rd PresenceAbsence/man/predicted.prevalence.Rd PresenceAbsence/man/pcc.Rd PresenceAbsence/man/optimal.thresholds.Rd PresenceAbsence/man/Kappa.Rd PresenceAbsence/man/error.threshold.plot.Rd PresenceAbsence/man/cmx.Rd PresenceAbsence/man/calibration.plot.Rd PresenceAbsence/man/auc.roc.plot.Rd PresenceAbsence/man/auc.Rd
PresenceAbsence/inst
PresenceAbsence/inst/CITATION
PresenceAbsence/inst/CHANGELOG
PresenceAbsence/DESCRIPTION
PresenceAbsence/demo
PresenceAbsence/demo/DemoSP.R
PresenceAbsence/demo/DemoSIM.R
PresenceAbsence/demo/00Index
PresenceAbsence/data
PresenceAbsence/data/SPPREV.txt.gz
PresenceAbsence/data/SPDATA.txt.gz
PresenceAbsence/data/SIM3DATA.txt.gz
PresenceAbsence/COPYRIGHTS

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