Man pages for PrevMap
Geostatistical Modelling of Spatially Referenced Prevalence Data

adjust.sigma2Adjustment factor for the variance of the convolution of...
autocor.plotPlot of the autocorrelgram for posterior samples
binary.probit.BayesBayesian estimation for the two-levels binary probit model
binomial.logistic.BayesBayesian estimation for the binomial logistic model
binomial.logistic.MCMLMonte Carlo Maximum Likelihood estimation for the binomial...
coef.PrevMapExtract model coefficients
coef.PrevMap.psExtract model coefficients from geostatistical linear model...
continuous.sampleSpatially continuous sampling
contour.pred.PrevMapContour plot of a predicted surface
control.mcmc.BayesControl settings for the MCMC algorithm used for Bayesian...
control.mcmc.Bayes.SPDEControl settings for the MCMC algorithm used for Bayesian...
control.mcmc.MCMLControl settings for the MCMC algorithm used for classical...
control.priorPriors specification
control.profileAuxliary function for controlling profile log-likelihood in...
create.ID.coordsID spatial coordinates
data_simSimulated binomial data-set over the unit square
dens.plotDensity plot for posterior samples
discrete.sampleSpatially discrete sampling
galiciaHeavy metal biomonitoring in Galicia
galicia.boundaryBoundary of Galicia
glgm.LAMaximum Likelihood estimation for generalised linear...
Laplace.samplingLangevin-Hastings MCMC for conditional simulation
Laplace.sampling.lrLangevin-Hastings MCMC for conditional simulation (low-rank...
Laplace.sampling.SPDEIndependence sampler for conditional simulation of a Gaussian...
linear.model.BayesBayesian estimation for the geostatistical linear Gaussian...
linear.model.MLEMaximum Likelihood estimation for the geostatistical linear...
lm.ps.MCMLMonte Carlo Maximum Likelihood estimation of the...
loaloaLoa loa prevalence data from 197 village surveys
loglik.ciProfile likelihood confidence intervals
loglik.linear.modelProfile log-likelihood or fixed parameters likelihood...
matern.kernelMatern kernel
plot.pred.PrevMapPlot of a predicted surface
plot.pred.PrevMap.psPlot of a predicted surface of geostatistical linear fits...
plot.PrevMap.diagnosticPlot of the variogram-based diagnostics
plot.profile.PrevMapPlot of the profile log-likelihood for the covariance...
plot.shape.maternPlot of the profile likelihood for the shape parameter of the...
point.mapPoint map
poisson.log.MCMLMonte Carlo Maximum Likelihood estimation for the Poisson...
set.par.psDefine the model coefficients of a geostatistical linear...
shape.maternProfile likelihood for the shape parameter of the Matern...
spat.corr.diagnosticDiagnostics for residual spatial correlation
spatial.pred.binomial.BayesBayesian spatial prediction for the binomial logistic and...
spatial.pred.binomial.MCMLSpatial predictions for the binomial logistic model using...
spatial.pred.linear.BayesBayesian spatial predictions for the geostatistical Linear...
spatial.pred.linear.MLESpatial predictions for the geostatistical Linear Gaussian...
spatial.pred.lm.psSpatial predictions for the geostatistical Linear Gaussian...
spatial.pred.poisson.MCMLSpatial predictions for the Poisson model with log link...
summary.Bayes.PrevMapSummarizing Bayesian model fits
summary.PrevMapSummarizing likelihood-based model fits
summary.PrevMap.psSummarizing fits of geostatistical linear models with...
trace.plotTrace-plots for posterior samples
trace.plot.MCMLTrace-plots of the importance sampling distribution samples...
trend.plotPlot of trends
variog.diagnostic.glgmVariogram-based validation for generalized linear...
variog.diagnostic.lmVariogram-based validation for linear geostatistical model...
variogramThe empirical variogram
PrevMap documentation built on Oct. 7, 2021, 5:07 p.m.