| BFDR |
Man page
Source code
|
| CDF-class |
Man page
|
| Combine |
Man page
|
| Combine,Numeric,Numeric-method |
Man page
|
| Combine,Vector,Vector-method |
Man page
|
| Combine,ttest,ttest-method |
Man page
|
| Combine-methods |
Man page
|
| CombinedNames |
Man page
Source code
|
| CorrectLimits |
Man page
|
| CorrectLimits,numeric-method |
Man page
|
| CorrectLimits-methods |
Man page
|
| MakeNames |
Man page
Source code
|
| Matrix-class |
Man page
|
| Mean |
Man page
|
| Mean,matrix-method |
Man page
|
| Mean,numeric-method |
Man page
|
| Mean-methods |
Man page
|
| Median |
Man page
|
| Median,matrix-method |
Man page
|
| Median,numeric-method |
Man page
|
| Median-methods |
Man page
|
| Mfrow |
Man page
Source code
|
| Numeric-class |
Man page
|
| PHATs.pvalue |
Man page
Source code
|
| PHATs.stat |
Man page
Source code
|
| PValue |
Man page
Source code
|
| PValueFUN |
Man page
Source code
|
| Pbinom |
Man page
Source code
|
| PsiHat |
Man page
|
| PsiHat-package |
Man page
|
| Rank |
Man page
|
| Rank,numeric-method |
Man page
|
| Rank-methods |
Man page
|
| Rep |
Man page
|
| Rep,Vector-method |
Man page
|
| Rep,matrix-method |
Man page
|
| Rep,nxprnSet-method |
Man page
|
| Rep-methods |
Man page
|
| RepNames |
Man page
Source code
|
| SFDR |
Man page
Source code
|
| Scalar-class |
Man page
|
| Sd |
Man page
|
| Sd,numeric-method |
Man page
|
| Sd-methods |
Man page
|
| Seq |
Man page
Source code
|
| Slot |
Man page
Source code
|
| Var |
Man page
Source code
|
| Vector-class |
Man page
|
| [,Matrix,ANY,ANY-method |
Man page
|
| [,Matrix,ANY,missing-method |
Man page
|
| [,Matrix,missing,ANY-method |
Man page
|
| [,Numeric,ANY,missing-method |
Man page
|
| [,bias.corrected.pvalue,ANY,missing-method |
Man page
|
| [,cvalue,ANY,missing-method |
Man page
|
| [,est.lfdr.x,ANY,missing-method |
Man page
|
| [,nExpressionSet,ANY,ANY-method |
Man page
|
| [,nExpressionSet,ANY,missing-method |
Man page
|
| [,nExpressionSet,missing,ANY-method |
Man page
|
| [,nxprnSet,ANY,ANY-method |
Man page
|
| [,nxprnSet,ANY,missing-method |
Man page
|
| [,nxprnSet,missing,ANY-method |
Man page
|
| [,nxprnSetPair,ANY,missing-method |
Man page
|
| [,ttest,ANY,missing-method |
Man page
|
| [-methods |
Man page
|
| [<-,Matrix,ANY,missing-method |
Man page
|
| [<-,Numeric,ANY,missing-method |
Man page
|
| [<--methods |
Man page
|
| alt-class |
Man page
|
| are |
Man page
Source code
|
| are_null |
Man page
Source code
|
| are_prob |
Man page
Source code
|
| are_unk |
Man page
Source code
|
| as.numeric,est.lfdr.x-method |
Man page
|
| as.numeric-methods |
Man page
|
| as_colmatrix |
Man page
Source code
|
| as_rowmatrix |
Man page
Source code
|
| assert.are |
Man page
Source code
|
| assert.is |
Man page
Source code
|
| assumedNull |
Man page
Source code
|
| b.notrobust |
Man page
Source code
|
| b.robust |
Man page
Source code
|
| bias.corrected.pvalue-class |
Man page
|
| binom_BFDR |
Man page
Source code
|
| binom_limit |
Man page
Source code
|
| binom_prob |
Man page
Source code
|
| binom_rBFDR |
Man page
Source code
|
| binom_rprob |
Man page
Source code
|
| blank.plot |
Man page
Source code
|
| blank_CDF |
Man page
Source code
|
| coerce,Numeric,numeric-method |
Man page
|
| coerce,bias.corrected.pvalue,numeric-method |
Man page
|
| coerce,cvalue,numeric-method |
Man page
|
| coerce,nExpressionSet,nXprnSet-method |
Man page
|
| coerce,nExpressionSet,numeric-method |
Man page
|
| coerce,nExpressionSet,nxprnSet-method |
Man page
|
| coerce,nxprnSet,nExpressionSet-method |
Man page
|
| coerce,nxprnSet,numeric-method |
Man page
|
| coerce,nxprnSetPair,nxprnSet-method |
Man page
|
| coerce,ttest,cvalue-method |
Man page
|
| coerce-methods |
Man page
|
| coerce<-,Numeric,numeric-method |
Man page
|
| coerce<-,bias.corrected.pvalue,numeric-method |
Man page
|
| coerce<--methods |
Man page
|
| coercenExpressionSet |
Man page
Source code
|
| colnames,ANY-method |
Man page
|
| colnames,nd1class-method |
Man page
|
| colnames-methods |
Man page
|
| colnames<-,ANY,ANY-method |
Man page
|
| colnames<-,nd1class,nd1class-method |
Man page
|
| colnames<--methods |
Man page
|
| compatible |
Man page
Source code
|
| confidence_CDF |
Man page
Source code
|
| cvalue-class |
Man page
|
| default |
Man page
Source code
|
| dim,nxprnSet-method |
Man page
|
| dim,nxprnSetPair-method |
Man page
|
| dim-methods |
Man page
|
| dimnames,nxprnSet-method |
Man page
|
| dimnames,nxprnSetPair-method |
Man page
|
| dimnames-methods |
Man page
|
| empiricalNull-class |
Man page
|
| est.lfdr.pvalue-class |
Man page
|
| est.lfdr.stat-class |
Man page
|
| est.lfdr.x-class |
Man page
|
| est2list |
Man page
Source code
|
| estimated.BFDR |
Man page
Source code
|
| estimated.LFDR |
Man page
Source code
|
| exp,nExpressionSet-method |
Man page
|
| exp,nxprnSet-method |
Man page
|
| exp,nxprnSetPair-method |
Man page
|
| exp-methods |
Man page
|
| expected.lfdr |
Man page
Source code
|
| geomean |
Source code
|
| get_other.from.testfun |
Man page
Source code
|
| get_pvalues |
Man page
Source code
|
| get_stats |
Man page
Source code
|
| grep_or |
Man page
Source code
|
| grepl_or |
Man page
Source code
|
| harmmean |
Source code
|
| hsm |
Man page
Source code
|
| indSortAsY |
Man page
Source code
|
| internals |
Man page
|
| isInteger |
Man page
Source code
|
| is_any |
Man page
|
| is_err |
Man page
Source code
|
| is_error |
Man page
Source code
|
| is_nd1class |
Man page
Source code
|
| is_nd2class |
Man page
Source code
|
| is_paired |
Man page
|
| is_paired,nd1class,nd1class-method |
Man page
|
| is_paired,nd1class,nd2class-method |
Man page
|
| is_paired,nd2class,nd1class-method |
Man page
|
| is_paired,nd2class,nd2class-method |
Man page
|
| is_paired-methods |
Man page
|
| is_positive |
Man page
|
| is_positive,nd1class-method |
Man page
|
| is_positive,nd2class-method |
Man page
|
| is_positive-methods |
Man page
|
| is_prob |
Man page
|
| is_prob,est.lfdr.pvalue-method |
Man page
|
| is_prob,est.lfdr.stat-method |
Man page
|
| is_prob,numeric-method |
Man page
|
| is_prob-methods |
Man page
|
| is_unique |
Man page
Source code
|
| is_unk |
Man page
Source code
|
| is_vide |
Man page
|
| k.add.NA.col.dataframe |
Source code
|
| k.bbe |
Source code
|
| k.bindSort |
Source code
|
| k.cbind |
Source code
|
| k.checkings.hbe |
Source code
|
| k.checkings.pvalue |
Source code
|
| k.elfdr |
Source code
|
| k.empNull |
Source code
|
| k.get.from.funtest |
Source code
|
| k.get.from.funtest.mat |
Source code
|
| k.hbe.method |
Source code
|
| k.indSort |
Source code
|
| k.locfdr2est.lfdr.pvalue |
Source code
|
| k.new_est.lfdr.x |
Source code
|
| k.qvalue |
Source code
|
| k.rvalue |
Source code
|
| k.valid.x |
Source code
|
| length,cvalue-method |
Man page
|
| length,est.lfdr.x-method |
Man page
|
| length,nExpressionSet-method |
Man page
|
| length,nxprnSet-method |
Man page
|
| length,nxprnSetPair-method |
Man page
|
| length,ttest-method |
Man page
|
| length-methods |
Man page
|
| lfdr |
Man page
Source code
|
| lfdr.assumedNull |
Man page
Source code
|
| lfdr.bbe |
Man page
Source code
|
| lfdr.bbe1 |
Man page
Source code
|
| lfdr.elfdr |
Man page
Source code
|
| lfdr.empiricalNull |
Man page
Source code
|
| lfdr.hbe |
Man page
Source code
|
| lfdr.hbea |
Man page
Source code
|
| lfdr.hbee |
Man page
Source code
|
| list2est |
Man page
Source code
|
| list2matrix |
Man page
Source code
|
| loccov |
Man page
Source code
|
| loccov2 |
Man page
Source code
|
| locfdr |
Man page
Source code
|
| locfdr.rname |
Man page
Source code
|
| locmle |
Man page
Source code
|
| log_lfdr_se |
Man page
Source code
|
| logb,ANY,ANY-method |
Man page
|
| logb,nExpressionSet,missing-method |
Man page
|
| logb,nXprnSet,missing-method |
Man page
|
| logb,nxprnSet,missing-method |
Man page
|
| logb,nxprnSetPair,missing-method |
Man page
|
| logb-methods |
Man page
|
| make_labels |
Man page
Source code
|
| matrix2list |
Man page
Source code
|
| monotonic.pvalue |
Man page
Source code
|
| nCDF |
Man page
Source code
|
| nExpressionSet-class |
Man page
|
| nMatrix |
Man page
|
| nMatrix,matrix-method |
Man page
|
| nMatrix,numeric-method |
Man page
|
| nMatrix-methods |
Man page
|
| nNumeric |
Man page
|
| nNumeric,numeric-method |
Man page
|
| nNumeric-methods |
Man page
|
| nScalar |
Man page
|
| nScalar,ANY-method |
Man page
|
| nScalar-methods |
Man page
|
| nXprnSet-class |
Man page
|
| nalt |
Man page
Source code
|
| names,cvalue-method |
Man page
|
| names,est.lfdr.x-method |
Man page
|
| names,nExpressionSet-method |
Man page
|
| names,nxprnSet-method |
Man page
|
| names,nxprnSetPair-method |
Man page
|
| names,ttest-method |
Man page
|
| names-methods |
Man page
|
| names<-,est.lfdr.x,character-method |
Man page
|
| names<--methods |
Man page
|
| nannotation |
Man page
|
| nannotation,nExpressionSet-method |
Man page
|
| nannotation,nxprnSet-method |
Man page
|
| nannotation,nxprnSetPair-method |
Man page
|
| nannotation-methods |
Man page
|
| ncbind |
Man page
Source code
|
| ncol,ANY-method |
Man page
|
| ncol,NULL-method |
Man page
|
| ncol,nd1class-method |
Man page
|
| ncol-methods |
Man page
|
| ncvalue |
Man page
Source code
|
| nd1class-class |
Man page
|
| nd2class-class |
Man page
|
| nempiricalNull |
Man page
Source code
|
| new_CDF |
Man page
Source code
|
| new_alt |
Man page
Source code
|
| new_bias.corrected.pvalue |
Man page
Source code
|
| new_cvalue |
Man page
Source code
|
| new_empiricalNull |
Man page
Source code
|
| new_est.lfdr.pvalue |
Man page
Source code
|
| new_est.lfdr.stat |
Man page
Source code
|
| new_nExpressionSet |
Man page
Source code
|
| new_nXprnSet |
Man page
Source code
|
| new_nxprnSet |
Man page
Source code
|
| new_nxprnSetPair |
Man page
|
| new_nxprnSetPair,matrix,matrix,missing-method |
Man page
|
| new_nxprnSetPair,nXprnSet,nXprnSet,missing-method |
Man page
|
| new_nxprnSetPair,nxprnSet,missing,character-method |
Man page
|
| new_nxprnSetPair,nxprnSet,nxprnSet,missing-method |
Man page
|
| new_nxprnSetPair-methods |
Man page
|
| new_ttest |
Man page
Source code
Source code
|
| nexprs |
Man page
|
| nexprs,nExpressionSet-method |
Man page
|
| nexprs,nXprnSet-method |
Man page
|
| nexprs,nxprnSet-method |
Man page
|
| nexprs,nxprnSetPair-method |
Man page
|
| nexprs-methods |
Man page
|
| nexprs<- |
Man page
|
| nexprs<-,nExpressionSet,matrix-method |
Man page
|
| nexprs<-,nExpressionSet,numeric-method |
Man page
|
| nexprs<-,nxprnSet,matrix-method |
Man page
|
| nexprs<-,nxprnSet,numeric-method |
Man page
|
| nexprs<--methods |
Man page
|
| nfData |
Man page
|
| nfData,nExpressionSet-method |
Man page
|
| nfData,nxprnSet-method |
Man page
|
| nfData,nxprnSetPair-method |
Man page
|
| nfData-methods |
Man page
|
| nfeatureNames |
Man page
|
| nfeatureNames,nExpressionSet-method |
Man page
|
| nfeatureNames,nxprnSet-method |
Man page
|
| nfeatureNames,nxprnSetObjectPair-method |
Man page
|
| nfeatureNames,nxprnSetPair-method |
Man page
|
| nfeatureNames-methods |
Man page
|
| npData |
Man page
|
| npData,nExpressionSet-method |
Man page
|
| npData,nxprnSet-method |
Man page
|
| npData,nxprnSetPair-method |
Man page
|
| npData-methods |
Man page
|
| nprnSet2matrix |
Man page
Source code
|
| nqvalue |
Man page
Source code
|
| nrbind |
Man page
Source code
|
| nrow,ANY-method |
Man page
|
| nrow,NULL-method |
Man page
|
| nrow,nd1class-method |
Man page
|
| nrow-methods |
Man page
|
| nscalar |
Man page
|
| nscalar,ANY-method |
Man page
|
| nscalar,numeric-method |
Man page
|
| nscalar,scalar-method |
Man page
|
| nscalar-methods |
Man page
|
| nsize |
Man page
Source code
|
| nttest |
Man page
Source code
|
| nunique |
Man page
|
| nx11 |
Man page
Source code
|
| nxprnSet-class |
Man page
|
| nxprnSetObject-class |
Man page
|
| nxprnSetObjectPair-class |
Man page
|
| nxprnSetObjects-class |
Man page
|
| nxprnSetPair-class |
Man page
|
| nxprnSubset |
Man page
|
| nxprnSubset,nExpressionSet-method |
Man page
|
| nxprnSubset,nxprnSet-method |
Man page
|
| nxprnSubset-methods |
Man page
|
| p0est |
Man page
Source code
|
| prep.2matrices |
Man page
Source code
|
| print,ANY-method |
Man page
|
| print,nExpressionSet-method |
Man page
|
| print,nXprnSet-method |
Man page
|
| print,nxprnSet-method |
Man page
|
| print,nxprnSetPair-method |
Man page
|
| print-methods |
Man page
|
| printGeneric |
Man page
Source code
|
| printInvalid |
Man page
Source code
|
| print_stats |
Man page
Source code
|
| probability_CDF |
Man page
Source code
|
| pval2stat |
Man page
Source code
|
| removeEQ.from.matrix |
Man page
Source code
|
| removeMissing |
Man page
|
| removeMissing,nxprnSet-method |
Man page
|
| removeMissing,nxprnSetPair-method |
Man page
|
| removeMissing-methods |
Man page
|
| removeNA.from.matrix |
Man page
Source code
|
| removeRC.from.matrix |
Man page
Source code
|
| rownames,ANY-method |
Man page
|
| rownames,nd1class-method |
Man page
|
| rownames-methods |
Man page
|
| rvalue |
Man page
Source code
|
| s3 |
Man page
|
| s3,ANY,character-method |
Man page
|
| s3,ANY,missing-method |
Man page
|
| s3-methods |
Man page
|
| s3_recursive |
Man page
Source code
|
| sameAsX_names |
Man page
Source code
|
| sameAsY |
Man page
Source code
|
| sameLengths |
Man page
Source code
|
| sameNames |
Man page
|
| sameNames,ANY-method |
Man page
|
| sameNames-methods |
Man page
|
| sameXY_names |
Man page
Source code
|
| sample_size |
Man page
|
| sample_size,matrix-method |
Man page
|
| sample_size,numeric-method |
Man page
|
| sample_size,nxprnSet-method |
Man page
|
| sample_size-methods |
Man page
|
| scalar-class |
Man page
|
| se.mean |
Man page
Source code
|
| silence |
Man page
Source code
|
| sorted |
Man page
Source code
Source code
|
| spline.des |
Man page
|
| stat2pval |
Man page
Source code
|
| stats |
Man page
Source code
|
| string2char |
Man page
Source code
|
| string2vect |
Source code
|
| t_test_CDF |
Man page
Source code
|
| ttest-class |
Man page
|
| undefAsNA |
Man page
Source code
|
| vect2string |
Man page
Source code
|
| wilkinson.test |
Man page
Source code
|
