Description Usage Arguments Value Note Author(s) References See Also Examples
View source: R/000092PSIhat.v0.R
rvalue
gives adjusted p-values based on qvalues, whereas nqvalue
is a wrapper of function qvalue
from R package qvalue
with simplified output.
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pvalue |
Input numeric vector of p-values. |
robust |
Logical. If |
... |
Further arguments passed to function |
A list with:
LFDR.hat |
Vector of estimates of the LFDR. |
p0.hat |
Estimated p0. |
pvalue |
Vector of p-values. |
info |
Method name and information about computation failure. |
If computation fails for all features, p0.hat
is set to NA and LFDR.hat
is set to a vector of NA with lengh equal to the number of features. If it fails for a given feature, only the resulting LFDR.hat
for that feature is set to NA. Error messages are not suppressed.
Code: Marta Padilla
Documentation: Alaa Ali, Kyle Leckett, Marta Padilla.
Padilla, M., & Bickel, D. R. (2012). Estimators of the local false discovery rate designed for small numbers of tests. Statistical Applications in Genetics and Molecular Biology, 11(5), art. 4.
Storey JD. (2002) A direct approach to false discovery rates. Journal of the Royal Statistical Society, Series B, 64: 479-498.
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