PublicationBiasBenchmark
Benchmark for Publication Bias Correction Methods

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42
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PublicationBiasBenchmark: Benchmark for Publication Bias Correction Methods
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API for PublicationBiasBenchmark
Benchmark for Publication Bias Correction Methods

Global functions
.HongAndReed2021_Alinaghi2018_ARBias Source code
.HongAndReed2021_Alinaghi2018_CollectingData Source code
.HongAndReed2021_Alinaghi2018_MetaStudy Source code
.HongAndReed2021_Alinaghi2018_PrimaryStudy Source code
.HongAndReed2021_Alinaghi2018_clusteredSE_ARRSM Source code
.HongAndReed2021_Bom2019_MetaStudy Source code
.HongAndReed2021_Bom2019_dgp Source code
.HongAndReed2021_Carter2019_analyB Source code
.HongAndReed2021_Carter2019_censor Source code
.HongAndReed2021_Carter2019_censorHigh0 Source code
.HongAndReed2021_Carter2019_censorMedium0 Source code
.HongAndReed2021_Carter2019_censor_1t_0 Source code
.HongAndReed2021_Carter2019_clamp Source code
.HongAndReed2021_Carter2019_expDataB Source code
.HongAndReed2021_Carter2019_getDir Source code
.HongAndReed2021_Carter2019_getN Source code
.HongAndReed2021_Carter2019_outlier Source code
.HongAndReed2021_Carter2019_p1_to_2 Source code
.HongAndReed2021_Carter2019_rtruncInvGamma Source code
.HongAndReed2021_Carter2019_simData_QRP Source code
.HongAndReed2021_Carter2019_simData_noQRP Source code
.HongAndReed2021_Carter2019_simMA Source code
.HongAndReed2021_Carter2019_testIt Source code
.HongAndReed2021_Stanley2017_MetaStudy_Cohen_d Source code
.HongAndReed2021_Stanley2017_MetaStudy_LogOR Source code
.HongAndReed2021_Stanley2017_PrimaryStudy_Cohen_d Source code
.HongAndReed2021_Stanley2017_PrimaryStudy_LogOR Source code
.check_robma_available Source code
.download_dgm_fun Source code
.get_osf_link Source code
.get_path Source code
.method_AK_AK1.est Source code
.method_AK_AK1logLik Source code
.method_AK_AK1logLik_LLH Source code
.method_AK_AK2.est Source code
.method_AK_AK2logLik Source code
.method_AK_AK2logLik_LLH Source code
.method_AK_ClusteredSE_AK Source code
.method_EK_EK.est Source code
.method_WILS_compute Source code
.method_WILS_compute_iter Source code
.method_pcurve_clamp Source code
.method_pcurve_ncp33chi Source code
.method_pcurve_ncp33f Source code
.method_pcurve_ncp33t Source code
.method_pcurve_ncp33z Source code
.method_pcurve_p_curve_2 Source code
.method_pcurve_p_curve_3 Source code
.method_pcurve_pc_skew Source code
.method_pcurve_pcurveEst Source code
.method_pcurve_pcurve_loss Source code
.method_pcurve_pcurve_prep Source code
.method_pcurve_theoretical_power_curve Source code
.onAttach Source code
.onLoad Source code
.upload_dgm_fun Source code
PublicationBiasBenchmark Man page
PublicationBiasBenchmark-package Man page
PublicationBiasBenchmark.get_option Man page Source code
PublicationBiasBenchmark.options Man page Source code
PublicationBiasBenchmark_options Man page
S_G_squared Man page Source code
S_theta_minus_theta_squared Man page Source code
S_theta_squared Man page Source code
S_w_squared Man page Source code
bias Man page Source code
bias_mcse Man page Source code
compare_measures Man page Source code
compare_single_measure Man page Source code
compute_measures Man page Source code
compute_single_measure Man page Source code
coverage Man page Source code
coverage_mcse Man page Source code
create_empty_result Man page Source code
dgm Man page Source code
dgm.Alinaghi2018 Man page Source code
dgm.Bom2019 Man page Source code
dgm.Carter2019 Man page Source code
dgm.Stanley2017 Man page Source code
dgm.default Man page Source code
dgm.no_bias Man page Source code
dgm_conditions Man page Source code
dgm_conditions.Alinaghi2018 Source code
dgm_conditions.Bom2019 Source code
dgm_conditions.Carter2019 Source code
dgm_conditions.Stanley2017 Source code
dgm_conditions.no_bias Source code
download_dgm Man page
download_dgm_datasets Man page Source code
download_dgm_measures Man page Source code
download_dgm_results Man page Source code
empirical_se Man page Source code
empirical_se_mcse Man page Source code
empirical_variance Man page Source code
empirical_variance_mcse Man page Source code
get_dgm_condition Man page Source code
get_method_extra_columns Man page Source code
get_method_setting Man page Source code
get_pp_values Source code
interval_score Man page Source code
interval_score_mcse Man page Source code
is.wholenumber Source code
maive_build_note Source code
maive_build_result Source code
maive_detect_instrument_strength Source code
maive_error_context Source code
maive_extract_ci Source code
maive_extract_diagnostics Source code
maive_extract_inference Source code
maive_normalize_settings Source code
maive_or_default Source code
maive_parse_first_stage_f Source code
maive_prepare_call Source code
maive_run_model Source code
maive_unique_strings Source code
maive_validate_input Source code
maive_warning_notes Source code
mean_ci_width Man page Source code
mean_ci_width_mcse Man page Source code
mean_generic_statistic Man page Source code
mean_generic_statistic_mcse Man page Source code
measure Man page Source code
measure.bias Source code
measure.convergence Source code
measure.coverage Source code
measure.default Source code
measure.empirical_se Source code
measure.empirical_variance Source code
measure.interval_score Source code
measure.mean_ci_width Source code
measure.mse Source code
measure.negative_likelihood_ratio Source code
measure.positive_likelihood_ratio Source code
measure.power Source code
measure.relative_bias Source code
measure.rmse Source code
measure_mcse Man page Source code
measure_mcse.bias Source code
measure_mcse.convergence Source code
measure_mcse.coverage Source code
measure_mcse.default Source code
measure_mcse.empirical_se Source code
measure_mcse.empirical_variance Source code
measure_mcse.interval_score Source code
measure_mcse.mean_ci_width Source code
measure_mcse.mse Source code
measure_mcse.negative_likelihood_ratio Source code
measure_mcse.positive_likelihood_ratio Source code
measure_mcse.power Source code
measure_mcse.relative_bias Source code
measure_mcse.rmse Source code
measures Man page
method Man page Source code
method.AK Man page Source code
method.EK Man page Source code
method.FMA Man page Source code
method.MAIVE Man page Source code
method.PEESE Man page Source code
method.PET Man page Source code
method.PETPEESE Man page Source code
method.RMA Man page Source code
method.RoBMA Man page Source code
method.SM Man page Source code
method.WAAPWLS Man page Source code
method.WILS Man page Source code
method.WLS Man page Source code
method.default Man page Source code
method.mean Man page Source code
method.pcurve Man page Source code
method.puniform Man page Source code
method.trimfill Man page Source code
method_condition_results_replacement Source code
method_extra_columns Man page Source code
method_extra_columns.AK Source code
method_extra_columns.EK Source code
method_extra_columns.FMA Source code
method_extra_columns.MAIVE Source code
method_extra_columns.PEESE Source code
method_extra_columns.PET Source code
method_extra_columns.PETPEESE Source code
method_extra_columns.RMA Source code
method_extra_columns.RoBMA Source code
method_extra_columns.SM Source code
method_extra_columns.WAAPWLS Source code
method_extra_columns.WILS Source code
method_extra_columns.WLS Source code
method_extra_columns.default Man page Source code
method_extra_columns.mean Source code
method_extra_columns.pcurve Source code
method_extra_columns.puniform Source code
method_extra_columns.trimfill Source code
method_settings Man page Source code
method_settings.AK Source code
method_settings.EK Source code
method_settings.FMA Source code
method_settings.MAIVE Source code
method_settings.PEESE Source code
method_settings.PET Source code
method_settings.PETPEESE Source code
method_settings.RMA Source code
method_settings.RoBMA Source code
method_settings.SM Source code
method_settings.WAAPWLS Source code
method_settings.WILS Source code
method_settings.WLS Source code
method_settings.mean Source code
method_settings.pcurve Source code
method_settings.puniform Source code
method_settings.trimfill Source code
mse Man page Source code
mse_mcse Man page Source code
negative_likelihood_ratio Man page Source code
negative_likelihood_ratio_mcse Man page Source code
pcurve_estimate_d_CI Source code
positive_likelihood_ratio Man page Source code
positive_likelihood_ratio_mcse Man page Source code
power Man page Source code
power_mcse Man page Source code
relative_bias Man page Source code
relative_bias_mcse Man page Source code
retrieve_dgm_dataset Man page Source code
retrieve_dgm_measures Man page Source code
retrieve_dgm_results Man page Source code
rmse Man page Source code
rmse_mcse Man page Source code
run_method Man page Source code
safe_merge Source code
safe_rbind Source code
simulate_dgm Man page Source code
upload_dgm Man page
upload_dgm_datasets Man page Source code
upload_dgm_measures Man page Source code
upload_dgm_results Man page Source code
validate_dgm_setting Man page Source code
validate_dgm_setting.Alinaghi2018 Source code
validate_dgm_setting.Bom2019 Source code
validate_dgm_setting.Carter2019 Source code
validate_dgm_setting.Stanley2017 Source code
validate_dgm_setting.no_bias Source code
PublicationBiasBenchmark documentation built on March 16, 2026, 5:07 p.m.

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