QCEWAS: Fast and Easy Quality Control of EWAS Results Files

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Tools for (automated and manual) quality control of the results of Epigenome-Wide Association Studies.

Author
Peter J. van der Most, Leanne K. Kupers, Ilja Nolte
Date of publication
2016-10-31 16:53:48
Maintainer
Peter J. van der Most <p.j.van.der.most@umcg.nl>
License
GPL (>= 3)
Version
1.0-9

View on CRAN

Man pages

EWAS_plots
Manhattan and Quantile-Quantile plots for EWAS results files
EWAS_QC
Automated Quality Control of EWAS results files
EWAS_series
Quality Control and Comparison of multiple EWAS results files
P_correlation
Testing P-value distribution
P_lambda
Calculation of the Lambda value
QCEWAS-package
Quality Control of Epigenome-Wide Association Study Results
translate_header
Translate column names into standard names

Files in this package

QCEWAS
QCEWAS/inst
QCEWAS/inst/CITATION
QCEWAS/inst/extdata
QCEWAS/inst/extdata/sample_map.txt.gz
QCEWAS/inst/extdata/sample1.txt.gz
QCEWAS/inst/extdata/sample_markers_to_exclude.txt
QCEWAS/inst/extdata/translation_table.txt
QCEWAS/inst/extdata/sample2.txt.gz
QCEWAS/inst/doc
QCEWAS/inst/doc/QCEWAS_Quick_Start_Guide_v109.docx
QCEWAS/NAMESPACE
QCEWAS/R
QCEWAS/R/script_v10-9_package.R
QCEWAS/MD5
QCEWAS/DESCRIPTION
QCEWAS/man
QCEWAS/man/EWAS_QC.Rd
QCEWAS/man/P_correlation.Rd
QCEWAS/man/QCEWAS-package.Rd
QCEWAS/man/EWAS_plots.Rd
QCEWAS/man/EWAS_series.Rd
QCEWAS/man/P_lambda.Rd
QCEWAS/man/translate_header.Rd