QCEWAS: Fast and Easy Quality Control of EWAS Results Files
Version 1.1-0

Tools for (automated and manual) quality control of the results of Epigenome-Wide Association Studies.

AuthorPeter J. van der Most, Leanne K. Kupers, Ilja Nolte
Date of publication2016-12-09 13:13:27
MaintainerPeter J. van der Most <p.j.van.der.most@umcg.nl>
LicenseGPL (>= 3)
Version1.1-0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("QCEWAS")

Getting started

Package overview

Popular man pages

EWAS_plots: Manhattan and Quantile-Quantile plots for EWAS results files
EWAS_QC: Automated Quality Control of EWAS results files
EWAS_series: Quality Control and Comparison of multiple EWAS results files
P_correlation: Testing P-value distribution
P_lambda: Calculation of the Lambda value
QCEWAS-package: Quality Control of Epigenome-Wide Association Study Results
translate_header: Translate column names into standard names
See all...

All man pages Function index File listing

Man pages

EWAS_plots: Manhattan and Quantile-Quantile plots for EWAS results files
EWAS_QC: Automated Quality Control of EWAS results files
EWAS_series: Quality Control and Comparison of multiple EWAS results files
P_correlation: Testing P-value distribution
P_lambda: Calculation of the Lambda value
QCEWAS-package: Quality Control of Epigenome-Wide Association Study Results
translate_header: Translate column names into standard names

Functions

EWAS_QC Man page Source code
EWAS_plots Man page Source code
EWAS_series Man page Source code
P_correlation Man page Source code
P_lambda Man page Source code
QCEWAS Man page
QCEWAS-package Man page
onAttach Source code
translate_header Man page Source code
zf_testLogical Source code

Files

inst
inst/CITATION
inst/extdata
inst/extdata/sample_map.txt.gz
inst/extdata/sample1.txt.gz
inst/extdata/sample_markers_to_exclude.txt
inst/extdata/translation_table.txt
inst/extdata/sample2.txt.gz
inst/doc
inst/doc/QCEWAS_Quick_Start_Guide_v110.docx
NAMESPACE
R
R/script_v11-0_package.R
MD5
DESCRIPTION
man
man/EWAS_QC.Rd
man/P_correlation.Rd
man/QCEWAS-package.Rd
man/EWAS_plots.Rd
man/EWAS_series.Rd
man/P_lambda.Rd
man/translate_header.Rd
QCEWAS documentation built on May 20, 2017, 4:29 a.m.

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