QNB: Differential RNA Methylation Analysis with Quad-Negative-Binomial Model

We present QNB, a statistical approach for differential RNA methylation analysis with count-based small-sample sequencing data. The method is based on 4 independent negative binomial distributions, and with their variances and means linked by local regressions, respectively. Please don't hesitate to contact <liulian19860905@163.com> if you have any questions.

Author
Lian Liu <liulian19860905@163.com>
Date of publication
2016-11-10 17:09:27
Maintainer
Lian Liu <liulian19860905@163.com>
License
GPL-2
Version
1.0.1

View on CRAN

Man pages

QNB-package
Differential RNA Methylation Analysis with...
qnbtest
This is the main function of differential RNA methylation...

Files in this package

QNB
QNB/inst
QNB/inst/extdata
QNB/inst/extdata/meth1.txt
QNB/inst/extdata/unmeth2.txt
QNB/inst/extdata/no_rep_unmeth1.txt
QNB/inst/extdata/unmeth1.txt
QNB/inst/extdata/no_rep_unmeth2.txt
QNB/inst/extdata/no_rep_meth2.txt
QNB/inst/extdata/meth2.txt
QNB/inst/extdata/no_rep_meth1.txt
QNB/inst/doc
QNB/inst/doc/QNB-Overview.R
QNB/inst/doc/QNB-Overview.Rnw
QNB/inst/doc/QNB-Overview.pdf
QNB/NAMESPACE
QNB/NEWS
QNB/R
QNB/R/getPoolMean.R
QNB/R/plotDispersion.R
QNB/R/estimateQ.R
QNB/R/baseFitPer.R
QNB/R/quadNBtest.R
QNB/R/calculateW.R
QNB/R/estimateE.R
QNB/R/poolFit.R
QNB/R/baseFitCondition.R
QNB/R/estimateP.R
QNB/R/sizeFactor2.R
QNB/R/sizeFactor.R
QNB/R/getBaseMean.R
QNB/R/fittedW.R
QNB/R/qnbtest.R
QNB/R/locfitW.R
QNB/R/calculateZ.R
QNB/vignettes
QNB/vignettes/QNB.bib
QNB/vignettes/QNB-Overview.Rnw
QNB/MD5
QNB/build
QNB/build/vignette.rds
QNB/DESCRIPTION
QNB/man
QNB/man/QNB-package.Rd
QNB/man/qnbtest.Rd