QuasiSeq: Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood

Identify differentially expressed genes in RNA-seq count data using quasi-Poisson or quasi-negative binomial models with 'QL', 'QLShrink' and 'QLSpline' methods described by Lund, Nettleton, McCarthy, and Smyth (2012) <DOI:10.1515/1544-6115.1826>. Report bias-reduced estimates of log fold changes.

Getting started

Package details

AuthorSteve Lund [aut, cre], Long Qu [aut, ctb], Klirk Bhasavanich [aut], Ian Marschner [aut] (The author of glm2::glm.fit2, which was modified slightly leading to glm.fit3 in this package.), R Core Team [aut] (The author of stats::glm.fit, which was modified slightly leading to glm.fit3 in this package.)
MaintainerSteve Lund <lundsp@gmail.com>
LicenseGPL (>= 2)
Version1.0-11-0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("QuasiSeq")

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QuasiSeq documentation built on Aug. 15, 2022, 5:07 p.m.