jags2bugs: Read jags output files in CODA format
In R2jags: Using R to Run 'JAGS'

Description Usage Arguments Author(s)

View source: R/jags2bugs.R

This function reads Markov Chain Monte Carlo output in the CODA format produced by jags and returns an object of class mcmc.list for further output analysis using the coda package.

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jags2bugs(path=getwd(), parameters.to.save, 
  n.chains=3, n.iter=2000, n.burnin=1000, n.thin=2,
  DIC=TRUE)

`path`	sets working directory during execution of this function; This should be the directory where CODA files are.
`parameters.to.save`	character vector of the names of the parameters to save which should be monitored.
`n.chains`	number of Markov chains (default: 3)
`n.iter`	number of total iterations per chain (including burn in; default: 2000)
`n.burnin`	length of burn in, i.e. number of iterations to discard at the beginning. Default is `n.iter/2`, that is, discarding the first half of the simulations.
`n.thin`	thinning rate, default is 2
`DIC`	logical; if `TRUE` (default), compute deviance, pD, and DIC. The rule `pD=var(deviance) / 2` is used.