RAC: R Package for Aqua Culture

Solves the bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass) and shellfish (Mussel and Clam) both at individual and population scale.

AuthorBaldan D. [aut, cre], Palazzo D. [ctb], Porporato E.M.D [ctb], Brigolin D. [ctb]
Date of publication2017-03-20 10:52:23 UTC
MaintainerBaldan D. <damiano.baldan91@gmail.com>
LicenseMIT + file LICENSE
Version1.1.1

View on CRAN

Man pages

Bass_ind_dataloader: Function that loads forcings data for Seabass individual...

Bass_ind_equations: Seabass bioenergetic individual model differential equations

Bass_ind_main: Seabass bioenergetic individual model

Bass_ind_post: Seabass bioenergetic individual model postprocessor

Bass_ind_pre: Seabass bioenergetic individual model preprocessor

Bass_ind_RKsolver: Solves the Seabass bioenergetic balance with a 4th order...

Bass_ind_skeleton: Creates the folders structure for Seabass individual...

Bass_pop_dataloader: Function that loads forcings data for Seabass population...

Bass_pop_equations: Seabass bioenergetic population model differential equations

Bass_pop_loop: Function that runs the Monte Carlo simulation for the Seabass...

Bass_pop_main: Seabass bioenergetic population model

Bass_pop_post: Postprocess the Seabass population bioenergetic model results

Bass_pop_pre: Seabass bioenergetic population model preprocessor

Bass_pop_RKsolver: Solves the Seabass population bioenergetic balance with a 4th...

Bass_pop_skeleton: Creates the folders structure for Seabass population model

Bream_ind_dataloader: Function that loads forcings data for Seabream individual...

Bream_ind_equations: Seabream bioenergetic individual model differential equations

Bream_ind_main: Seabream bioenergetic individual model

Bream_ind_post: Postprocess the Seabream indivual bioenergetic model results

Bream_ind_pre: Seabream bioenergetic individual model preprocessor

Bream_ind_RKsolver: Solves the Seabream individual bioenergetic balance with a...

Bream_ind_skeleton: Creates the folders structure for Seabream individual...

Bream_pop_dataloader: Function that loads forcings data for Seabream population...

Bream_pop_equations: Seabream bioenergetic population model differential equations

Bream_pop_loop: Function that runs the Monte Carlo simulation for the...

Bream_pop_main: Seabream bioenergetic population model

Bream_pop_post: Postprocess the Bream population bioenergetic model results

Bream_pop_pre: Seabream bioenergetic population model preprocessor

Bream_pop_RKsolver: Solves the Seabream population bioenergetic balance with a...

Bream_pop_skeleton: Creates the folders structure for Seabream population model

ClamF_ind_dataloader: Function that loads forcings data for Clam individual...

ClamF_ind_equations: Clam bioenergetic individual model differential equations...

ClamF_ind_main: Clam bioenergetic individual model (alternative version)

ClamF_ind_post: Postprocess the Clam indivual bioenergetic model (alternative...

ClamF_ind_pre: Clam bioenergetic individual model preprocessor (alternativer...

ClamF_ind_RKsolver: Solves the Clam bioenergetic balance (alternative version)...

ClamF_ind_skeleton: Creates the folders structure for Clam individual...

ClamF_pop_dataloader: Function that loads forcings data for Clam population model...

ClamF_pop_equations: Clam bioenergetic population model differential equations...

ClamF_pop_loop: Function that runs the Monte Carlo simulation for the Clam...

ClamF_pop_main: Clam bioenergetic population model (alternative version)

ClamF_pop_post: Postprocess the Clam population bioenergetic model results...

ClamF_pop_pre: Clam bioenergetic population model (alternative version)...

ClamF_pop_RKsolver: Solves the Clam bioenergetic balance (alternative version)...

ClamF_pop_skeleton: Creates the folders structure for Clam population model...

Clam_ind_dataloader: Function that loads forcings data for Clam individual...

Clam_ind_equations: Clam bioenergetic individual model differential equations

Clam_ind_main: Clam bioenergetic individual model

Clam_ind_post: Postprocess the Clam individual bioenergetic model results

Clam_ind_pre: Clam bioenergetic individual model preprocessor

clam_ind_RKsolver: Solves the Clam individual bioenergetic balance with a 4th...

Clam_ind_skeleton: Creates the folders structure for Clam individual...

Clam_pop_dataloader: Function that loads forcings data for Clam population model...

Clam_pop_equations: Clam bioenergetic population model differential equations

Clam_pop_loop: Function that runs the Monte Carlo simulation for the Clam...

Clam_pop_main: Clam bioenergetic population model

Clam_pop_post: Postprocess the Clam population bioenergetic model results

Clam_pop_pre: Clam bioenergetic population model preprocessor

Clam_pop_RKsolver: Solves the Clam bioenergetic balance for population with a...

Clam_pop_skeleton: Creates the folders structure for Clam population model

Mussel_ind_dataloader: Function that loads forcings data for Mussel individual...

Mussel_ind_equations: Mussel bioenergetic individual model differential equations

Mussel_ind_main: Mussel bioenergetic individual model

Mussel_ind_post: Postprocess the Mussel indivual bioenergetic model results

Mussel_ind_pre: Mussel bioenergetic individual model preprocessor

Mussel_ind_RKsolver: Solves the Mussel individual bioenergetic balance with a 4th...

Mussel_ind_skeleton: Creates the folders structure for Mussel individual...

Mussel_pop_dataloader: Function that loads forcings data for Mussel population model...

Mussel_pop_equations: Mussel bioenergetic population model differential equations

Mussel_pop_loop: Function that runs the Monte Carlo simulation for the Mussel...

Mussel_pop_main: Mussel bioenergetic population model

Mussel_pop_post: Postprocess the Mussel population bioenergetic model results

Mussel_pop_pre: Mussel bioenergetic population model preprocessor

Mussel_pop_RKsolver: Solves the Mussel population bioenergetic balance with a 4th...

Mussel_pop_skeleton: Creates the folders structure for Mussel population model

Pop_fun: Function that solves the population dynamics equations...

Functions

Bass_ind_dataloader Man page
Bass_ind_equations Man page
Bass_ind_main Man page
Bass_ind_post Man page
Bass_ind_pre Man page
Bass_ind_RKsolver Man page
Bass_ind_skeleton Man page
Bass_pop_dataloader Man page
Bass_pop_equations Man page
Bass_pop_loop Man page
Bass_pop_main Man page
Bass_pop_post Man page
Bass_pop_pre Man page
Bass_pop_RKsolver Man page
Bass_pop_skeleton Man page
Bream_ind_dataloader Man page
Bream_ind_equations Man page
Bream_ind_main Man page
Bream_ind_post Man page
Bream_ind_pre Man page
Bream_ind_RKsolver Man page
Bream_ind_skeleton Man page
Bream_pop_dataloader Man page
Bream_pop_equations Man page
Bream_pop_loop Man page
Bream_pop_main Man page
Bream_pop_post Man page
Bream_pop_pre Man page
Bream_pop_RKsolver Man page
Bream_pop_skeleton Man page
ClamF_ind_dataloader Man page
ClamF_ind_equations Man page
ClamF_ind_main Man page
ClamF_ind_post Man page
ClamF_ind_pre Man page
ClamF_ind_RKsolver Man page
ClamF_ind_skeleton Man page
ClamF_pop_dataloader Man page
ClamF_pop_equations Man page
ClamF_pop_loop Man page
ClamF_pop_main Man page
ClamF_pop_post Man page
ClamF_pop_pre Man page
ClamF_pop_RKsolver Man page
ClamF_pop_skeleton Man page
Clam_ind_dataloader Man page
Clam_ind_equations Man page
Clam_ind_main Man page
Clam_ind_post Man page
Clam_ind_pre Man page
clam_ind_RKsolver Man page
Clam_ind_skeleton Man page
Clam_pop_dataloader Man page
Clam_pop_equations Man page
Clam_pop_loop Man page
Clam_pop_main Man page
Clam_pop_post Man page
Clam_pop_pre Man page
Clam_pop_RKsolver Man page
Clam_pop_skeleton Man page
Mussel_ind_dataloader Man page
Mussel_ind_equations Man page
Mussel_ind_main Man page
Mussel_ind_post Man page
Mussel_ind_pre Man page
Mussel_ind_RKsolver Man page
Mussel_ind_skeleton Man page
Mussel_pop_dataloader Man page
Mussel_pop_equations Man page
Mussel_pop_loop Man page
Mussel_pop_main Man page
Mussel_pop_post Man page
Mussel_pop_pre Man page
Mussel_pop_RKsolver Man page
Mussel_pop_skeleton Man page
Pop_fun Man page

Files

RAC
RAC/inst
RAC/inst/extdata
RAC/inst/extdata/Bass_pop_data
RAC/inst/extdata/Bass_pop_data/Food_characterization.csv
RAC/inst/extdata/Bass_pop_data/Feeding.csv
RAC/inst/extdata/Bass_pop_data/Management.csv
RAC/inst/extdata/Bass_pop_data/Population.csv
RAC/inst/extdata/Bass_pop_data/Parameters.csv
RAC/inst/extdata/Bass_pop_data/Water_temperature.csv
RAC/inst/extdata/Bream_pop_data
RAC/inst/extdata/Bream_pop_data/Food_characterization.csv
RAC/inst/extdata/Bream_pop_data/Feeding.csv
RAC/inst/extdata/Bream_pop_data/Management.csv
RAC/inst/extdata/Bream_pop_data/Population.csv
RAC/inst/extdata/Bream_pop_data/Parameters.csv
RAC/inst/extdata/Bream_pop_data/Water_temperature.csv
RAC/inst/extdata/Bass_ind_data
RAC/inst/extdata/Bass_ind_data/Food_characterization.csv
RAC/inst/extdata/Bass_ind_data/Feeding.csv
RAC/inst/extdata/Bass_ind_data/Parameters.csv
RAC/inst/extdata/Bass_ind_data/Water_temperature.csv
RAC/inst/extdata/Clam_pop_data
RAC/inst/extdata/Clam_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/Clam_pop_data/POM.csv
RAC/inst/extdata/Clam_pop_data/Management.csv
RAC/inst/extdata/Clam_pop_data/Population.csv
RAC/inst/extdata/Clam_pop_data/Parameters.csv
RAC/inst/extdata/Clam_pop_data/POC.csv
RAC/inst/extdata/Clam_pop_data/TSM.csv
RAC/inst/extdata/Clam_pop_data/Water_temperature.csv
RAC/inst/extdata/Bream_ind_data
RAC/inst/extdata/Bream_ind_data/Food_characterization.csv
RAC/inst/extdata/Bream_ind_data/Feeding.csv
RAC/inst/extdata/Bream_ind_data/Parameters.csv
RAC/inst/extdata/Bream_ind_data/Water_temperature.csv
RAC/inst/extdata/ClamF_ind_data
RAC/inst/extdata/ClamF_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/ClamF_ind_data/Parameters.csv
RAC/inst/extdata/ClamF_ind_data/Water_temperature.csv
RAC/inst/extdata/ClamF_pop_data
RAC/inst/extdata/ClamF_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/ClamF_pop_data/Management.csv
RAC/inst/extdata/ClamF_pop_data/Population.csv
RAC/inst/extdata/ClamF_pop_data/Parameters.csv
RAC/inst/extdata/ClamF_pop_data/Water_temperature.csv
RAC/inst/extdata/Mussel_pop_data
RAC/inst/extdata/Mussel_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/Mussel_pop_data/POM.csv
RAC/inst/extdata/Mussel_pop_data/POC_characterization.csv
RAC/inst/extdata/Mussel_pop_data/Management.csv
RAC/inst/extdata/Mussel_pop_data/Population.csv
RAC/inst/extdata/Mussel_pop_data/Parameters.csv
RAC/inst/extdata/Mussel_pop_data/POC.csv
RAC/inst/extdata/Mussel_pop_data/TSM.csv
RAC/inst/extdata/Mussel_pop_data/Water_temperature.csv
RAC/inst/extdata/Clam_ind_data
RAC/inst/extdata/Clam_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/Clam_ind_data/POM.csv
RAC/inst/extdata/Clam_ind_data/Parameters.csv
RAC/inst/extdata/Clam_ind_data/POC.csv
RAC/inst/extdata/Clam_ind_data/TSM.csv
RAC/inst/extdata/Clam_ind_data/Water_temperature.csv
RAC/inst/extdata/Mussel_ind_data
RAC/inst/extdata/Mussel_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/Mussel_ind_data/POM.csv
RAC/inst/extdata/Mussel_ind_data/POC_characterization.csv
RAC/inst/extdata/Mussel_ind_data/Parameters.csv
RAC/inst/extdata/Mussel_ind_data/POC.csv
RAC/inst/extdata/Mussel_ind_data/TSM.csv
RAC/inst/extdata/Mussel_ind_data/Water_temperature.csv
RAC/inst/doc
RAC/inst/doc/vignette.Rmd
RAC/inst/doc/vignette.html
RAC/NAMESPACE
RAC/R
RAC/R/Bream_pop_skeleton.R RAC/R/Clam_ind_dataloader.R RAC/R/Clam_pop_skeleton.R RAC/R/ClamF_ind_dataloader.R RAC/R/Clam_ind_pre.R RAC/R/Mussel_ind_pre.R RAC/R/Bass_pop_equations.R RAC/R/ClamF_ind_RKsolver.R RAC/R/Clam_pop_loop.R RAC/R/Bass_pop_skeleton.R RAC/R/Bream_pop_post.R RAC/R/Bream_ind_main.R RAC/R/ClamF_pop_skeleton.R RAC/R/Bream_pop_loop.R RAC/R/Mussel_pop_loop.R RAC/R/Clam_pop_post.R RAC/R/Mussel_ind_main.R RAC/R/ClamF_ind_skeleton.R RAC/R/Bream_ind_post.R RAC/R/ClamF_pop_post.R RAC/R/Bream_ind_skeleton.R RAC/R/Bass_ind_RKsolver.R RAC/R/Clam_pop_main.R RAC/R/Mussel_ind_equations.R RAC/R/Clam_pop_pre.R RAC/R/Mussel_pop_skeleton.R RAC/R/ClamF_pop_RKsolver.R RAC/R/Pop_fun.R RAC/R/ClamF_ind_main.R RAC/R/Bass_pop_main.R RAC/R/Mussel_ind_skeleton.R RAC/R/Bass_pop_loop.R RAC/R/Mussel_pop_RKsolver.R RAC/R/Clam_ind_skeleton.R RAC/R/Bass_pop_pre.R RAC/R/Clam_ind_equations.R RAC/R/Bream_ind_dataloader.R RAC/R/ClamF_pop_main.R RAC/R/ClamF_ind_pre.R RAC/R/Bass_pop_dataloader.R RAC/R/Mussel_pop_pre.R RAC/R/Clam_pop_equations.R RAC/R/ClamF_ind_post.R RAC/R/Mussel_pop_dataloader.R RAC/R/Bream_ind_RKsolver.R RAC/R/Bream_pop_main.R RAC/R/Mussel_ind_post.R RAC/R/ClamF_ind_equations.R RAC/R/Clam_ind_RKsolver.R RAC/R/Bass_ind_skeleton.R RAC/R/Clam_ind_post.R RAC/R/Bream_ind_equations.R RAC/R/Mussel_pop_post.R RAC/R/Bream_pop_equations.R RAC/R/Bass_ind_equations.R RAC/R/Bass_pop_post.R RAC/R/Clam_ind_main.R RAC/R/Bass_pop_RKsolver.R RAC/R/ClamF_pop_dataloader.R RAC/R/Bass_ind_post.R RAC/R/Bream_pop_dataloader.R RAC/R/Mussel_pop_equations.R RAC/R/ClamF_pop_loop.R RAC/R/Clam_pop_dataloader.R RAC/R/Mussel_pop_main.R RAC/R/Mussel_ind_RKsolver.R RAC/R/Bream_ind_pre.R RAC/R/Bream_pop_pre.R RAC/R/ClamF_pop_pre.R RAC/R/Bass_ind_main.R RAC/R/Bass_ind_dataloader.R RAC/R/Bream_pop_RKsolver.R RAC/R/Mussel_ind_dataloader.R RAC/R/Bass_ind_pre.R RAC/R/ClamF_pop_equations.R RAC/R/Clam_pop_RKsolver.R
RAC/vignettes
RAC/vignettes/vignette.Rmd
RAC/MD5
RAC/build
RAC/build/vignette.rds
RAC/DESCRIPTION
RAC/man
RAC/man/Clam_ind_equations.Rd RAC/man/Bass_ind_main.Rd RAC/man/ClamF_ind_post.Rd RAC/man/Clam_pop_skeleton.Rd RAC/man/Bream_pop_RKsolver.Rd RAC/man/Bream_pop_skeleton.Rd RAC/man/Bass_pop_main.Rd RAC/man/Bass_pop_pre.Rd RAC/man/ClamF_ind_pre.Rd RAC/man/ClamF_ind_equations.Rd RAC/man/Mussel_ind_RKsolver.Rd RAC/man/Bream_ind_skeleton.Rd RAC/man/Bream_pop_equations.Rd RAC/man/Bass_pop_skeleton.Rd RAC/man/Bream_pop_main.Rd RAC/man/ClamF_ind_main.Rd RAC/man/Bass_ind_pre.Rd RAC/man/Bass_ind_post.Rd RAC/man/Bream_pop_loop.Rd RAC/man/Mussel_pop_loop.Rd RAC/man/Bass_ind_RKsolver.Rd RAC/man/Mussel_ind_dataloader.Rd RAC/man/Mussel_pop_main.Rd RAC/man/Bream_ind_RKsolver.Rd RAC/man/Bream_pop_post.Rd RAC/man/Clam_pop_RKsolver.Rd RAC/man/Clam_pop_dataloader.Rd RAC/man/Mussel_pop_RKsolver.Rd RAC/man/Bass_ind_skeleton.Rd RAC/man/ClamF_pop_dataloader.Rd RAC/man/Clam_ind_skeleton.Rd RAC/man/clam_ind_RKsolver.Rd RAC/man/Bass_pop_post.Rd RAC/man/Pop_fun.Rd RAC/man/Bream_ind_equations.Rd RAC/man/Mussel_ind_equations.Rd RAC/man/Bream_pop_pre.Rd RAC/man/ClamF_pop_skeleton.Rd RAC/man/Bream_pop_dataloader.Rd RAC/man/Bass_pop_RKsolver.Rd RAC/man/ClamF_pop_post.Rd RAC/man/Bream_ind_post.Rd RAC/man/Mussel_pop_post.Rd RAC/man/Clam_pop_post.Rd RAC/man/Mussel_pop_pre.Rd RAC/man/ClamF_ind_dataloader.Rd RAC/man/Bass_pop_dataloader.Rd RAC/man/Bass_ind_equations.Rd RAC/man/Clam_ind_post.Rd RAC/man/Clam_ind_main.Rd RAC/man/Clam_pop_equations.Rd RAC/man/ClamF_pop_RKsolver.Rd RAC/man/Mussel_ind_main.Rd RAC/man/Clam_pop_loop.Rd RAC/man/Mussel_pop_equations.Rd RAC/man/Clam_pop_pre.Rd RAC/man/ClamF_pop_pre.Rd RAC/man/Mussel_pop_skeleton.Rd RAC/man/Bass_ind_dataloader.Rd RAC/man/Mussel_ind_skeleton.Rd RAC/man/Mussel_pop_dataloader.Rd RAC/man/ClamF_ind_RKsolver.Rd RAC/man/Bass_pop_equations.Rd RAC/man/Bream_ind_main.Rd RAC/man/Clam_pop_main.Rd RAC/man/Clam_ind_pre.Rd RAC/man/Bream_ind_pre.Rd RAC/man/Bream_ind_dataloader.Rd RAC/man/Mussel_ind_post.Rd RAC/man/Bass_pop_loop.Rd RAC/man/Mussel_ind_pre.Rd RAC/man/Clam_ind_dataloader.Rd RAC/man/ClamF_pop_equations.Rd RAC/man/ClamF_pop_loop.Rd RAC/man/ClamF_ind_skeleton.Rd RAC/man/ClamF_pop_main.Rd
RAC/LICENSE

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