RAC: R Package for Aqua Culture

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Solves the bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass) and shellfish (Mussel and Clam) both at individual and population scale.

Author
Baldan D. [aut, cre], Palazzo D. [ctb], Porporato E.M.D [ctb], Brigolin D. [ctb]
Date of publication
2016-10-15 11:16:27
Maintainer
Baldan D. <damiano.baldan91@gmail.com>
License
MIT + file LICENSE
Version
1.0.1

View on CRAN

Man pages

Bass_ind_dataloader
Function that loads forcings data for Bass individual...
Bass_ind_equations
Bass bioenergetic individual model differential equations
Bass_ind_main
Bass bioenergetic individual model
Bass_ind_post
Postprocess the Bass indivual bioenergetic model results
Bass_ind_pre
Bream bioenergetic individual model preprocessor
Bass_ind_RKsolver
Solves the Bass bioenergetic balance with a 4th order Runge...
Bass_ind_skeleton
Creates the folders structure for Bass individual...
Bass_pop_dataloader
Function that loads forcings data for Bass population model...
Bass_pop_equations
Bass bioenergetic individual model differential equations
Bass_pop_loop
Function that runs the montecarlo simulation for the Bass...
Bass_pop_main
Bass bioenergetic population model
Bass_pop_post
Postprocess the Bass population bioenergetic model results
Bass_pop_pre
Bass bioenergetic population model preprocessor
Bass_pop_RKsolver
Solves the Bass population bioenergetic balance with a 4th...
Bass_pop_skeleton
Creates the folders structure for Bass population model
Bream_ind_dataloader
Function that loads forcings data for Bream individual...
Bream_ind_equations
Bream bioenergetic individual model differential equations
Bream_ind_main
Bream bioenergetic individual model
Bream_ind_post
Postprocess the Bream indivual bioenergetic model results
Bream_ind_pre
Bream bioenergetic individual model preprocessor
Bream_ind_RKsolver
Solves the Bream bioenergetic balance with a 4th order Runge...
Bream_ind_skeleton
Creates the folders structure for Bream individual...
Bream_pop_dataloader
Function that loads forcings data for Bream population model...
Bream_pop_equations
Bass bioenergetic individual model differential equations
Bream_pop_loop
Function that runs the montecarlo simulation for the Bream...
Bream_pop_main
Bream bioenergetic population model
Bream_pop_post
Postprocess the Bream population bioenergetic model results
Bream_pop_pre
Bream bioenergetic population model preprocessor
Bream_pop_RKsolver
Solves the Bream population bioenergetic balance with a 4th...
Bream_pop_skeleton
Creates the folders structure for Bream population model
ClamF_ind_dataloader
Function that loads forcings data for Clam individual...
ClamF_ind_equations
Clam bioenergetic individual model differential equations -...
ClamF_ind_main
Clam bioenergetic individual model - alternative version
ClamF_ind_post
Postprocess the Clam indivual bioenergetic model results
ClamF_ind_pre
Clam bioenergetic individual model preprocessor -...
ClamF_ind_RKsolver
Solves the Clam bioenergetic balance with a 4th order Runge...
ClamF_ind_skeleton
Creates the folders structure for Clam individual...
ClamF_pop_dataloader
Function that loads forcings data for Clam population model -...
ClamF_pop_equations
Clam bioenergetic individual model differential equations -...
ClamF_pop_loop
Function that runs the montecarlo simulation for the Clam...
ClamF_pop_main
Clam bioenergetic population model - alternative version
ClamF_pop_post
Postprocess the Clam population bioenergetic model results -...
ClamF_pop_pre
Clam bioenergetic population model preprocessor
ClamF_pop_RKsolver
Solves the Clam bioenergetic balance with a 4th order Runge...
ClamF_pop_skeleton
Creates the folders structure for Clam population model...
Clam_ind_dataloader
Function that loads forcings data for Clam individual...
Clam_ind_equations
Clam bioenergetic individual model differential equations
Clam_ind_main
Clam bioenergetic individual model
Clam_ind_post
Postprocess the Clam indivual bioenergetic model results
Clam_ind_pre
Clam bioenergetic individual model preprocessor
clam_ind_RKsolver
Solves the Clam bioenergetic balance with a 4th order Runge...
Clam_ind_skeleton
Creates the folders structure for Clam individual...
Clam_pop_dataloader
Function that loads forcings data for Clam population model...
Clam_pop_equations
Clam bioenergetic individual model differential equations
Clam_pop_loop
Function that runs the montecarlo simulation for the Clam...
Clam_pop_main
Mussel bioenergetic population model
Clam_pop_post
Postprocess the Clam population bioenergetic model results
Clam_pop_pre
Clam bioenergetic population model preprocessor
Clam_pop_RKsolver
Solves the Clam bioenergetic balance with a 4th order Runge...
Clam_pop_skeleton
Creates the folders structure for Clam population model
Mussel_ind_dataloader
Function that loads forcings data for Mussel individual...
Mussel_ind_equations
Mussel bioenergetic individual model differential equations
Mussel_ind_main
Mussel bioenergetic individual model
Mussel_ind_post
Postprocess the Mussel indivual bioenergetic model results
Mussel_ind_pre
Mussel bioenergetic individual model preprocessor
Mussel_ind_RKsolver
Function that runs the montecarlo simulation for the Bream...
Mussel_ind_skeleton
Creates the folders structure for Mussel individual...
Mussel_pop_dataloader
Function that loads forcings data for Mussel population model...
Mussel_pop_equations
Bass bioenergetic individual model differential equations
Mussel_pop_loop
Function that runs the montecarlo simulation for the Bream...
Mussel_pop_main
Mussel bioenergetic population model
Mussel_pop_post
Postprocess the Mussel population bioenergetic model results
Mussel_pop_pre
Mussel bioenergetic population model preprocessor
Mussel_pop_RKsolver
Solves the Bream population bioenergetic balance with a 4th...
Mussel_pop_skeleton
Creates the folders structure for Mussel population model
Pop_fun
Function that solves the population dynamics equations...

Files in this package

RAC
RAC/inst
RAC/inst/extdata
RAC/inst/extdata/Bass_pop_data
RAC/inst/extdata/Bass_pop_data/Food_characterization.csv
RAC/inst/extdata/Bass_pop_data/Feeding.csv
RAC/inst/extdata/Bass_pop_data/Management.csv
RAC/inst/extdata/Bass_pop_data/Population.csv
RAC/inst/extdata/Bass_pop_data/Parameters.csv
RAC/inst/extdata/Bass_pop_data/Water_temperature.csv
RAC/inst/extdata/Bream_pop_data
RAC/inst/extdata/Bream_pop_data/Food_characterization.csv
RAC/inst/extdata/Bream_pop_data/Feeding.csv
RAC/inst/extdata/Bream_pop_data/Management.csv
RAC/inst/extdata/Bream_pop_data/Population.csv
RAC/inst/extdata/Bream_pop_data/Parameters.csv
RAC/inst/extdata/Bream_pop_data/Water_temperature.csv
RAC/inst/extdata/Bass_ind_data
RAC/inst/extdata/Bass_ind_data/Food_characterization.csv
RAC/inst/extdata/Bass_ind_data/Feeding.csv
RAC/inst/extdata/Bass_ind_data/Parameters.csv
RAC/inst/extdata/Bass_ind_data/Water_temperature.csv
RAC/inst/extdata/Clam_pop_data
RAC/inst/extdata/Clam_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/Clam_pop_data/POM.csv
RAC/inst/extdata/Clam_pop_data/Management.csv
RAC/inst/extdata/Clam_pop_data/Population.csv
RAC/inst/extdata/Clam_pop_data/Parameters.csv
RAC/inst/extdata/Clam_pop_data/POC.csv
RAC/inst/extdata/Clam_pop_data/TSM.csv
RAC/inst/extdata/Clam_pop_data/Water_temperature.csv
RAC/inst/extdata/Bream_ind_data
RAC/inst/extdata/Bream_ind_data/Food_characterization.csv
RAC/inst/extdata/Bream_ind_data/Feeding.csv
RAC/inst/extdata/Bream_ind_data/Parameters.csv
RAC/inst/extdata/Bream_ind_data/Water_temperature.csv
RAC/inst/extdata/ClamF_ind_data
RAC/inst/extdata/ClamF_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/ClamF_ind_data/Parameters.csv
RAC/inst/extdata/ClamF_ind_data/Water_temperature.csv
RAC/inst/extdata/ClamF_pop_data
RAC/inst/extdata/ClamF_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/ClamF_pop_data/Management.csv
RAC/inst/extdata/ClamF_pop_data/Population.csv
RAC/inst/extdata/ClamF_pop_data/Parameters.csv
RAC/inst/extdata/ClamF_pop_data/Water_temperature.csv
RAC/inst/extdata/Mussel_pop_data
RAC/inst/extdata/Mussel_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/Mussel_pop_data/POM.csv
RAC/inst/extdata/Mussel_pop_data/POC_characterization.csv
RAC/inst/extdata/Mussel_pop_data/Management.csv
RAC/inst/extdata/Mussel_pop_data/Population.csv
RAC/inst/extdata/Mussel_pop_data/Parameters.csv
RAC/inst/extdata/Mussel_pop_data/POC.csv
RAC/inst/extdata/Mussel_pop_data/TSM.csv
RAC/inst/extdata/Mussel_pop_data/Water_temperature.csv
RAC/inst/extdata/Clam_ind_data
RAC/inst/extdata/Clam_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/Clam_ind_data/POM.csv
RAC/inst/extdata/Clam_ind_data/Parameters.csv
RAC/inst/extdata/Clam_ind_data/POC.csv
RAC/inst/extdata/Clam_ind_data/TSM.csv
RAC/inst/extdata/Clam_ind_data/Water_temperature.csv
RAC/inst/extdata/Mussel_ind_data
RAC/inst/extdata/Mussel_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/Mussel_ind_data/POM.csv
RAC/inst/extdata/Mussel_ind_data/POC_characterization.csv
RAC/inst/extdata/Mussel_ind_data/Parameters.csv
RAC/inst/extdata/Mussel_ind_data/POC.csv
RAC/inst/extdata/Mussel_ind_data/TSM.csv
RAC/inst/extdata/Mussel_ind_data/Water_temperature.csv
RAC/inst/doc
RAC/inst/doc/vignette.Rmd
RAC/inst/doc/vignette.html
RAC/NAMESPACE
RAC/R
RAC/R/Bream_pop_skeleton.R
RAC/R/Clam_ind_dataloader.R
RAC/R/Clam_pop_skeleton.R
RAC/R/ClamF_ind_dataloader.R
RAC/R/Clam_ind_pre.R
RAC/R/Mussel_ind_pre.R
RAC/R/Bass_pop_equations.R
RAC/R/ClamF_ind_RKsolver.R
RAC/R/Clam_pop_loop.R
RAC/R/Bass_pop_skeleton.R
RAC/R/Bream_pop_post.R
RAC/R/Bream_ind_main.R
RAC/R/ClamF_pop_skeleton.R
RAC/R/Bream_pop_loop.R
RAC/R/Mussel_pop_loop.R
RAC/R/Clam_pop_post.R
RAC/R/Mussel_ind_main.R
RAC/R/ClamF_ind_skeleton.R
RAC/R/Bream_ind_post.R
RAC/R/ClamF_pop_post.R
RAC/R/Bream_ind_skeleton.R
RAC/R/Bass_ind_RKsolver.R
RAC/R/Clam_pop_main.R
RAC/R/Mussel_ind_equations.R
RAC/R/Clam_pop_pre.R
RAC/R/Mussel_pop_skeleton.R
RAC/R/ClamF_pop_RKsolver.R
RAC/R/Pop_fun.R
RAC/R/ClamF_ind_main.R
RAC/R/Bass_pop_main.R
RAC/R/Mussel_ind_skeleton.R
RAC/R/Bass_pop_loop.R
RAC/R/Mussel_pop_RKsolver.R
RAC/R/Clam_ind_skeleton.R
RAC/R/Bass_pop_pre.R
RAC/R/Clam_ind_equations.R
RAC/R/Bream_ind_dataloader.R
RAC/R/ClamF_pop_main.R
RAC/R/ClamF_ind_pre.R
RAC/R/Bass_pop_dataloader.R
RAC/R/Mussel_pop_pre.R
RAC/R/Clam_pop_equations.R
RAC/R/ClamF_ind_post.R
RAC/R/Mussel_pop_dataloader.R
RAC/R/Bream_ind_RKsolver.R
RAC/R/Bream_pop_main.R
RAC/R/Mussel_ind_post.R
RAC/R/ClamF_ind_equations.R
RAC/R/Clam_ind_RKsolver.R
RAC/R/Bass_ind_skeleton.R
RAC/R/Clam_ind_post.R
RAC/R/Bream_ind_equations.R
RAC/R/Mussel_pop_post.R
RAC/R/Bream_pop_equations.R
RAC/R/Bass_ind_equations.R
RAC/R/Bass_pop_post.R
RAC/R/Clam_ind_main.R
RAC/R/Bass_pop_RKsolver.R
RAC/R/ClamF_pop_dataloader.R
RAC/R/Bass_ind_post.R
RAC/R/Bream_pop_dataloader.R
RAC/R/Mussel_pop_equations.R
RAC/R/ClamF_pop_loop.R
RAC/R/Clam_pop_dataloader.R
RAC/R/Mussel_pop_main.R
RAC/R/Mussel_ind_RKsolver.R
RAC/R/Bream_ind_pre.R
RAC/R/Bream_pop_pre.R
RAC/R/ClamF_pop_pre.R
RAC/R/Bass_ind_main.R
RAC/R/Bass_ind_dataloader.R
RAC/R/Bream_pop_RKsolver.R
RAC/R/Mussel_ind_dataloader.R
RAC/R/Bass_ind_pre.R
RAC/R/ClamF_pop_equations.R
RAC/R/Clam_pop_RKsolver.R
RAC/vignettes
RAC/vignettes/vignette.Rmd
RAC/MD5
RAC/build
RAC/build/vignette.rds
RAC/DESCRIPTION
RAC/man
RAC/man/Clam_ind_equations.Rd
RAC/man/Bass_ind_main.Rd
RAC/man/ClamF_ind_post.Rd
RAC/man/Clam_pop_skeleton.Rd
RAC/man/Bream_pop_RKsolver.Rd
RAC/man/Bream_pop_skeleton.Rd
RAC/man/Bass_pop_main.Rd
RAC/man/Bass_pop_pre.Rd
RAC/man/ClamF_ind_pre.Rd
RAC/man/ClamF_ind_equations.Rd
RAC/man/Mussel_ind_RKsolver.Rd
RAC/man/Bream_ind_skeleton.Rd
RAC/man/Bream_pop_equations.Rd
RAC/man/Bass_pop_skeleton.Rd
RAC/man/Bream_pop_main.Rd
RAC/man/ClamF_ind_main.Rd
RAC/man/Bass_ind_pre.Rd
RAC/man/Bass_ind_post.Rd
RAC/man/Bream_pop_loop.Rd
RAC/man/Mussel_pop_loop.Rd
RAC/man/Bass_ind_RKsolver.Rd
RAC/man/Mussel_ind_dataloader.Rd
RAC/man/Mussel_pop_main.Rd
RAC/man/Bream_ind_RKsolver.Rd
RAC/man/Bream_pop_post.Rd
RAC/man/Clam_pop_RKsolver.Rd
RAC/man/Clam_pop_dataloader.Rd
RAC/man/Mussel_pop_RKsolver.Rd
RAC/man/Bass_ind_skeleton.Rd
RAC/man/ClamF_pop_dataloader.Rd
RAC/man/Clam_ind_skeleton.Rd
RAC/man/clam_ind_RKsolver.Rd
RAC/man/Bass_pop_post.Rd
RAC/man/Pop_fun.Rd
RAC/man/Bream_ind_equations.Rd
RAC/man/Mussel_ind_equations.Rd
RAC/man/Bream_pop_pre.Rd
RAC/man/ClamF_pop_skeleton.Rd
RAC/man/Bream_pop_dataloader.Rd
RAC/man/Bass_pop_RKsolver.Rd
RAC/man/ClamF_pop_post.Rd
RAC/man/Bream_ind_post.Rd
RAC/man/Mussel_pop_post.Rd
RAC/man/Clam_pop_post.Rd
RAC/man/Mussel_pop_pre.Rd
RAC/man/ClamF_ind_dataloader.Rd
RAC/man/Bass_pop_dataloader.Rd
RAC/man/Bass_ind_equations.Rd
RAC/man/Clam_ind_post.Rd
RAC/man/Clam_ind_main.Rd
RAC/man/Clam_pop_equations.Rd
RAC/man/ClamF_pop_RKsolver.Rd
RAC/man/Mussel_ind_main.Rd
RAC/man/Clam_pop_loop.Rd
RAC/man/Mussel_pop_equations.Rd
RAC/man/Clam_pop_pre.Rd
RAC/man/ClamF_pop_pre.Rd
RAC/man/Mussel_pop_skeleton.Rd
RAC/man/Bass_ind_dataloader.Rd
RAC/man/Mussel_ind_skeleton.Rd
RAC/man/Mussel_pop_dataloader.Rd
RAC/man/ClamF_ind_RKsolver.Rd
RAC/man/Bass_pop_equations.Rd
RAC/man/Bream_ind_main.Rd
RAC/man/Clam_pop_main.Rd
RAC/man/Clam_ind_pre.Rd
RAC/man/Bream_ind_pre.Rd
RAC/man/Bream_ind_dataloader.Rd
RAC/man/Mussel_ind_post.Rd
RAC/man/Bass_pop_loop.Rd
RAC/man/Mussel_ind_pre.Rd
RAC/man/Clam_ind_dataloader.Rd
RAC/man/ClamF_pop_equations.Rd
RAC/man/ClamF_pop_loop.Rd
RAC/man/ClamF_ind_skeleton.Rd
RAC/man/ClamF_pop_main.Rd
RAC/LICENSE