RAC: R Package for Aqua Culture

Solves the bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass) and shellfish (Mussel and Clam) both at individual and population scale.

Author
Baldan D. [aut, cre], Palazzo D. [ctb], Porporato E.M.D [ctb], Brigolin D. [ctb]
Date of publication
2016-10-15 11:16:27
Maintainer
Baldan D. <damiano.baldan91@gmail.com>
License
MIT + file LICENSE
Version
1.0.1

View on CRAN

Man pages

Bass_ind_dataloader
Function that loads forcings data for Bass individual...
Bass_ind_equations
Bass bioenergetic individual model differential equations
Bass_ind_main
Bass bioenergetic individual model
Bass_ind_post
Postprocess the Bass indivual bioenergetic model results
Bass_ind_pre
Bream bioenergetic individual model preprocessor
Bass_ind_RKsolver
Solves the Bass bioenergetic balance with a 4th order Runge...
Bass_ind_skeleton
Creates the folders structure for Bass individual...
Bass_pop_dataloader
Function that loads forcings data for Bass population model...
Bass_pop_equations
Bass bioenergetic individual model differential equations
Bass_pop_loop
Function that runs the montecarlo simulation for the Bass...
Bass_pop_main
Bass bioenergetic population model
Bass_pop_post
Postprocess the Bass population bioenergetic model results
Bass_pop_pre
Bass bioenergetic population model preprocessor
Bass_pop_RKsolver
Solves the Bass population bioenergetic balance with a 4th...
Bass_pop_skeleton
Creates the folders structure for Bass population model
Bream_ind_dataloader
Function that loads forcings data for Bream individual...
Bream_ind_equations
Bream bioenergetic individual model differential equations
Bream_ind_main
Bream bioenergetic individual model
Bream_ind_post
Postprocess the Bream indivual bioenergetic model results
Bream_ind_pre
Bream bioenergetic individual model preprocessor
Bream_ind_RKsolver
Solves the Bream bioenergetic balance with a 4th order Runge...
Bream_ind_skeleton
Creates the folders structure for Bream individual...
Bream_pop_dataloader
Function that loads forcings data for Bream population model...
Bream_pop_equations
Bass bioenergetic individual model differential equations
Bream_pop_loop
Function that runs the montecarlo simulation for the Bream...
Bream_pop_main
Bream bioenergetic population model
Bream_pop_post
Postprocess the Bream population bioenergetic model results
Bream_pop_pre
Bream bioenergetic population model preprocessor
Bream_pop_RKsolver
Solves the Bream population bioenergetic balance with a 4th...
Bream_pop_skeleton
Creates the folders structure for Bream population model
ClamF_ind_dataloader
Function that loads forcings data for Clam individual...
ClamF_ind_equations
Clam bioenergetic individual model differential equations -...
ClamF_ind_main
Clam bioenergetic individual model - alternative version
ClamF_ind_post
Postprocess the Clam indivual bioenergetic model results
ClamF_ind_pre
Clam bioenergetic individual model preprocessor -...
ClamF_ind_RKsolver
Solves the Clam bioenergetic balance with a 4th order Runge...
ClamF_ind_skeleton
Creates the folders structure for Clam individual...
ClamF_pop_dataloader
Function that loads forcings data for Clam population model -...
ClamF_pop_equations
Clam bioenergetic individual model differential equations -...
ClamF_pop_loop
Function that runs the montecarlo simulation for the Clam...
ClamF_pop_main
Clam bioenergetic population model - alternative version
ClamF_pop_post
Postprocess the Clam population bioenergetic model results -...
ClamF_pop_pre
Clam bioenergetic population model preprocessor
ClamF_pop_RKsolver
Solves the Clam bioenergetic balance with a 4th order Runge...
ClamF_pop_skeleton
Creates the folders structure for Clam population model...
Clam_ind_dataloader
Function that loads forcings data for Clam individual...
Clam_ind_equations
Clam bioenergetic individual model differential equations
Clam_ind_main
Clam bioenergetic individual model
Clam_ind_post
Postprocess the Clam indivual bioenergetic model results
Clam_ind_pre
Clam bioenergetic individual model preprocessor
clam_ind_RKsolver
Solves the Clam bioenergetic balance with a 4th order Runge...
Clam_ind_skeleton
Creates the folders structure for Clam individual...
Clam_pop_dataloader
Function that loads forcings data for Clam population model...
Clam_pop_equations
Clam bioenergetic individual model differential equations
Clam_pop_loop
Function that runs the montecarlo simulation for the Clam...
Clam_pop_main
Mussel bioenergetic population model
Clam_pop_post
Postprocess the Clam population bioenergetic model results
Clam_pop_pre
Clam bioenergetic population model preprocessor
Clam_pop_RKsolver
Solves the Clam bioenergetic balance with a 4th order Runge...
Clam_pop_skeleton
Creates the folders structure for Clam population model
Mussel_ind_dataloader
Function that loads forcings data for Mussel individual...
Mussel_ind_equations
Mussel bioenergetic individual model differential equations
Mussel_ind_main
Mussel bioenergetic individual model
Mussel_ind_post
Postprocess the Mussel indivual bioenergetic model results
Mussel_ind_pre
Mussel bioenergetic individual model preprocessor
Mussel_ind_RKsolver
Function that runs the montecarlo simulation for the Bream...
Mussel_ind_skeleton
Creates the folders structure for Mussel individual...
Mussel_pop_dataloader
Function that loads forcings data for Mussel population model...
Mussel_pop_equations
Bass bioenergetic individual model differential equations
Mussel_pop_loop
Function that runs the montecarlo simulation for the Bream...
Mussel_pop_main
Mussel bioenergetic population model
Mussel_pop_post
Postprocess the Mussel population bioenergetic model results
Mussel_pop_pre
Mussel bioenergetic population model preprocessor
Mussel_pop_RKsolver
Solves the Bream population bioenergetic balance with a 4th...
Mussel_pop_skeleton
Creates the folders structure for Mussel population model
Pop_fun
Function that solves the population dynamics equations...

Files in this package

RAC
RAC/inst
RAC/inst/extdata
RAC/inst/extdata/Bass_pop_data
RAC/inst/extdata/Bass_pop_data/Food_characterization.csv
RAC/inst/extdata/Bass_pop_data/Feeding.csv
RAC/inst/extdata/Bass_pop_data/Management.csv
RAC/inst/extdata/Bass_pop_data/Population.csv
RAC/inst/extdata/Bass_pop_data/Parameters.csv
RAC/inst/extdata/Bass_pop_data/Water_temperature.csv
RAC/inst/extdata/Bream_pop_data
RAC/inst/extdata/Bream_pop_data/Food_characterization.csv
RAC/inst/extdata/Bream_pop_data/Feeding.csv
RAC/inst/extdata/Bream_pop_data/Management.csv
RAC/inst/extdata/Bream_pop_data/Population.csv
RAC/inst/extdata/Bream_pop_data/Parameters.csv
RAC/inst/extdata/Bream_pop_data/Water_temperature.csv
RAC/inst/extdata/Bass_ind_data
RAC/inst/extdata/Bass_ind_data/Food_characterization.csv
RAC/inst/extdata/Bass_ind_data/Feeding.csv
RAC/inst/extdata/Bass_ind_data/Parameters.csv
RAC/inst/extdata/Bass_ind_data/Water_temperature.csv
RAC/inst/extdata/Clam_pop_data
RAC/inst/extdata/Clam_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/Clam_pop_data/POM.csv
RAC/inst/extdata/Clam_pop_data/Management.csv
RAC/inst/extdata/Clam_pop_data/Population.csv
RAC/inst/extdata/Clam_pop_data/Parameters.csv
RAC/inst/extdata/Clam_pop_data/POC.csv
RAC/inst/extdata/Clam_pop_data/TSM.csv
RAC/inst/extdata/Clam_pop_data/Water_temperature.csv
RAC/inst/extdata/Bream_ind_data
RAC/inst/extdata/Bream_ind_data/Food_characterization.csv
RAC/inst/extdata/Bream_ind_data/Feeding.csv
RAC/inst/extdata/Bream_ind_data/Parameters.csv
RAC/inst/extdata/Bream_ind_data/Water_temperature.csv
RAC/inst/extdata/ClamF_ind_data
RAC/inst/extdata/ClamF_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/ClamF_ind_data/Parameters.csv
RAC/inst/extdata/ClamF_ind_data/Water_temperature.csv
RAC/inst/extdata/ClamF_pop_data
RAC/inst/extdata/ClamF_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/ClamF_pop_data/Management.csv
RAC/inst/extdata/ClamF_pop_data/Population.csv
RAC/inst/extdata/ClamF_pop_data/Parameters.csv
RAC/inst/extdata/ClamF_pop_data/Water_temperature.csv
RAC/inst/extdata/Mussel_pop_data
RAC/inst/extdata/Mussel_pop_data/Chlorophyll_a.csv
RAC/inst/extdata/Mussel_pop_data/POM.csv
RAC/inst/extdata/Mussel_pop_data/POC_characterization.csv
RAC/inst/extdata/Mussel_pop_data/Management.csv
RAC/inst/extdata/Mussel_pop_data/Population.csv
RAC/inst/extdata/Mussel_pop_data/Parameters.csv
RAC/inst/extdata/Mussel_pop_data/POC.csv
RAC/inst/extdata/Mussel_pop_data/TSM.csv
RAC/inst/extdata/Mussel_pop_data/Water_temperature.csv
RAC/inst/extdata/Clam_ind_data
RAC/inst/extdata/Clam_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/Clam_ind_data/POM.csv
RAC/inst/extdata/Clam_ind_data/Parameters.csv
RAC/inst/extdata/Clam_ind_data/POC.csv
RAC/inst/extdata/Clam_ind_data/TSM.csv
RAC/inst/extdata/Clam_ind_data/Water_temperature.csv
RAC/inst/extdata/Mussel_ind_data
RAC/inst/extdata/Mussel_ind_data/Chlorophyll_a.csv
RAC/inst/extdata/Mussel_ind_data/POM.csv
RAC/inst/extdata/Mussel_ind_data/POC_characterization.csv
RAC/inst/extdata/Mussel_ind_data/Parameters.csv
RAC/inst/extdata/Mussel_ind_data/POC.csv
RAC/inst/extdata/Mussel_ind_data/TSM.csv
RAC/inst/extdata/Mussel_ind_data/Water_temperature.csv
RAC/inst/doc
RAC/inst/doc/vignette.Rmd
RAC/inst/doc/vignette.html
RAC/NAMESPACE
RAC/R
RAC/R/Bream_pop_skeleton.R
RAC/R/Clam_ind_dataloader.R
RAC/R/Clam_pop_skeleton.R
RAC/R/ClamF_ind_dataloader.R
RAC/R/Clam_ind_pre.R
RAC/R/Mussel_ind_pre.R
RAC/R/Bass_pop_equations.R
RAC/R/ClamF_ind_RKsolver.R
RAC/R/Clam_pop_loop.R
RAC/R/Bass_pop_skeleton.R
RAC/R/Bream_pop_post.R
RAC/R/Bream_ind_main.R
RAC/R/ClamF_pop_skeleton.R
RAC/R/Bream_pop_loop.R
RAC/R/Mussel_pop_loop.R
RAC/R/Clam_pop_post.R
RAC/R/Mussel_ind_main.R
RAC/R/ClamF_ind_skeleton.R
RAC/R/Bream_ind_post.R
RAC/R/ClamF_pop_post.R
RAC/R/Bream_ind_skeleton.R
RAC/R/Bass_ind_RKsolver.R
RAC/R/Clam_pop_main.R
RAC/R/Mussel_ind_equations.R
RAC/R/Clam_pop_pre.R
RAC/R/Mussel_pop_skeleton.R
RAC/R/ClamF_pop_RKsolver.R
RAC/R/Pop_fun.R
RAC/R/ClamF_ind_main.R
RAC/R/Bass_pop_main.R
RAC/R/Mussel_ind_skeleton.R
RAC/R/Bass_pop_loop.R
RAC/R/Mussel_pop_RKsolver.R
RAC/R/Clam_ind_skeleton.R
RAC/R/Bass_pop_pre.R
RAC/R/Clam_ind_equations.R
RAC/R/Bream_ind_dataloader.R
RAC/R/ClamF_pop_main.R
RAC/R/ClamF_ind_pre.R
RAC/R/Bass_pop_dataloader.R
RAC/R/Mussel_pop_pre.R
RAC/R/Clam_pop_equations.R
RAC/R/ClamF_ind_post.R
RAC/R/Mussel_pop_dataloader.R
RAC/R/Bream_ind_RKsolver.R
RAC/R/Bream_pop_main.R
RAC/R/Mussel_ind_post.R
RAC/R/ClamF_ind_equations.R
RAC/R/Clam_ind_RKsolver.R
RAC/R/Bass_ind_skeleton.R
RAC/R/Clam_ind_post.R
RAC/R/Bream_ind_equations.R
RAC/R/Mussel_pop_post.R
RAC/R/Bream_pop_equations.R
RAC/R/Bass_ind_equations.R
RAC/R/Bass_pop_post.R
RAC/R/Clam_ind_main.R
RAC/R/Bass_pop_RKsolver.R
RAC/R/ClamF_pop_dataloader.R
RAC/R/Bass_ind_post.R
RAC/R/Bream_pop_dataloader.R
RAC/R/Mussel_pop_equations.R
RAC/R/ClamF_pop_loop.R
RAC/R/Clam_pop_dataloader.R
RAC/R/Mussel_pop_main.R
RAC/R/Mussel_ind_RKsolver.R
RAC/R/Bream_ind_pre.R
RAC/R/Bream_pop_pre.R
RAC/R/ClamF_pop_pre.R
RAC/R/Bass_ind_main.R
RAC/R/Bass_ind_dataloader.R
RAC/R/Bream_pop_RKsolver.R
RAC/R/Mussel_ind_dataloader.R
RAC/R/Bass_ind_pre.R
RAC/R/ClamF_pop_equations.R
RAC/R/Clam_pop_RKsolver.R
RAC/vignettes
RAC/vignettes/vignette.Rmd
RAC/MD5
RAC/build
RAC/build/vignette.rds
RAC/DESCRIPTION
RAC/man
RAC/man/Clam_ind_equations.Rd
RAC/man/Bass_ind_main.Rd
RAC/man/ClamF_ind_post.Rd
RAC/man/Clam_pop_skeleton.Rd
RAC/man/Bream_pop_RKsolver.Rd
RAC/man/Bream_pop_skeleton.Rd
RAC/man/Bass_pop_main.Rd
RAC/man/Bass_pop_pre.Rd
RAC/man/ClamF_ind_pre.Rd
RAC/man/ClamF_ind_equations.Rd
RAC/man/Mussel_ind_RKsolver.Rd
RAC/man/Bream_ind_skeleton.Rd
RAC/man/Bream_pop_equations.Rd
RAC/man/Bass_pop_skeleton.Rd
RAC/man/Bream_pop_main.Rd
RAC/man/ClamF_ind_main.Rd
RAC/man/Bass_ind_pre.Rd
RAC/man/Bass_ind_post.Rd
RAC/man/Bream_pop_loop.Rd
RAC/man/Mussel_pop_loop.Rd
RAC/man/Bass_ind_RKsolver.Rd
RAC/man/Mussel_ind_dataloader.Rd
RAC/man/Mussel_pop_main.Rd
RAC/man/Bream_ind_RKsolver.Rd
RAC/man/Bream_pop_post.Rd
RAC/man/Clam_pop_RKsolver.Rd
RAC/man/Clam_pop_dataloader.Rd
RAC/man/Mussel_pop_RKsolver.Rd
RAC/man/Bass_ind_skeleton.Rd
RAC/man/ClamF_pop_dataloader.Rd
RAC/man/Clam_ind_skeleton.Rd
RAC/man/clam_ind_RKsolver.Rd
RAC/man/Bass_pop_post.Rd
RAC/man/Pop_fun.Rd
RAC/man/Bream_ind_equations.Rd
RAC/man/Mussel_ind_equations.Rd
RAC/man/Bream_pop_pre.Rd
RAC/man/ClamF_pop_skeleton.Rd
RAC/man/Bream_pop_dataloader.Rd
RAC/man/Bass_pop_RKsolver.Rd
RAC/man/ClamF_pop_post.Rd
RAC/man/Bream_ind_post.Rd
RAC/man/Mussel_pop_post.Rd
RAC/man/Clam_pop_post.Rd
RAC/man/Mussel_pop_pre.Rd
RAC/man/ClamF_ind_dataloader.Rd
RAC/man/Bass_pop_dataloader.Rd
RAC/man/Bass_ind_equations.Rd
RAC/man/Clam_ind_post.Rd
RAC/man/Clam_ind_main.Rd
RAC/man/Clam_pop_equations.Rd
RAC/man/ClamF_pop_RKsolver.Rd
RAC/man/Mussel_ind_main.Rd
RAC/man/Clam_pop_loop.Rd
RAC/man/Mussel_pop_equations.Rd
RAC/man/Clam_pop_pre.Rd
RAC/man/ClamF_pop_pre.Rd
RAC/man/Mussel_pop_skeleton.Rd
RAC/man/Bass_ind_dataloader.Rd
RAC/man/Mussel_ind_skeleton.Rd
RAC/man/Mussel_pop_dataloader.Rd
RAC/man/ClamF_ind_RKsolver.Rd
RAC/man/Bass_pop_equations.Rd
RAC/man/Bream_ind_main.Rd
RAC/man/Clam_pop_main.Rd
RAC/man/Clam_ind_pre.Rd
RAC/man/Bream_ind_pre.Rd
RAC/man/Bream_ind_dataloader.Rd
RAC/man/Mussel_ind_post.Rd
RAC/man/Bass_pop_loop.Rd
RAC/man/Mussel_ind_pre.Rd
RAC/man/Clam_ind_dataloader.Rd
RAC/man/ClamF_pop_equations.Rd
RAC/man/ClamF_pop_loop.Rd
RAC/man/ClamF_ind_skeleton.Rd
RAC/man/ClamF_pop_main.Rd
RAC/LICENSE