RAC: R Package for Aqua Culture
Version 1.1.1

Solves the bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass) and shellfish (Mussel and Clam) both at individual and population scale.

AuthorBaldan D. [aut, cre], Palazzo D. [ctb], Porporato E.M.D [ctb], Brigolin D. [ctb]
Date of publication2017-03-20 10:52:23 UTC
MaintainerBaldan D. <damiano.baldan91@gmail.com>
LicenseMIT + file LICENSE
Version1.1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("RAC")

Getting started

RAC"

Popular man pages

Bass_ind_skeleton: Creates the folders structure for Seabass individual...
Bass_pop_main: Seabass bioenergetic population model
Bream_ind_dataloader: Function that loads forcings data for Seabream individual...
Clam_ind_equations: Clam bioenergetic individual model differential equations
Clam_pop_dataloader: Function that loads forcings data for Clam population model...
Mussel_pop_loop: Function that runs the Monte Carlo simulation for the Mussel...
Pop_fun: Function that solves the population dynamics equations...
See all...

All man pages Function index File listing

Man pages

Bass_ind_dataloader: Function that loads forcings data for Seabass individual...
Bass_ind_equations: Seabass bioenergetic individual model differential equations
Bass_ind_main: Seabass bioenergetic individual model
Bass_ind_post: Seabass bioenergetic individual model postprocessor
Bass_ind_pre: Seabass bioenergetic individual model preprocessor
Bass_ind_RKsolver: Solves the Seabass bioenergetic balance with a 4th order...
Bass_ind_skeleton: Creates the folders structure for Seabass individual...
Bass_pop_dataloader: Function that loads forcings data for Seabass population...
Bass_pop_equations: Seabass bioenergetic population model differential equations
Bass_pop_loop: Function that runs the Monte Carlo simulation for the Seabass...
Bass_pop_main: Seabass bioenergetic population model
Bass_pop_post: Postprocess the Seabass population bioenergetic model results
Bass_pop_pre: Seabass bioenergetic population model preprocessor
Bass_pop_RKsolver: Solves the Seabass population bioenergetic balance with a 4th...
Bass_pop_skeleton: Creates the folders structure for Seabass population model
Bream_ind_dataloader: Function that loads forcings data for Seabream individual...
Bream_ind_equations: Seabream bioenergetic individual model differential equations
Bream_ind_main: Seabream bioenergetic individual model
Bream_ind_post: Postprocess the Seabream indivual bioenergetic model results
Bream_ind_pre: Seabream bioenergetic individual model preprocessor
Bream_ind_RKsolver: Solves the Seabream individual bioenergetic balance with a...
Bream_ind_skeleton: Creates the folders structure for Seabream individual...
Bream_pop_dataloader: Function that loads forcings data for Seabream population...
Bream_pop_equations: Seabream bioenergetic population model differential equations
Bream_pop_loop: Function that runs the Monte Carlo simulation for the...
Bream_pop_main: Seabream bioenergetic population model
Bream_pop_post: Postprocess the Bream population bioenergetic model results
Bream_pop_pre: Seabream bioenergetic population model preprocessor
Bream_pop_RKsolver: Solves the Seabream population bioenergetic balance with a...
Bream_pop_skeleton: Creates the folders structure for Seabream population model
ClamF_ind_dataloader: Function that loads forcings data for Clam individual...
ClamF_ind_equations: Clam bioenergetic individual model differential equations...
ClamF_ind_main: Clam bioenergetic individual model (alternative version)
ClamF_ind_post: Postprocess the Clam indivual bioenergetic model (alternative...
ClamF_ind_pre: Clam bioenergetic individual model preprocessor (alternativer...
ClamF_ind_RKsolver: Solves the Clam bioenergetic balance (alternative version)...
ClamF_ind_skeleton: Creates the folders structure for Clam individual...
ClamF_pop_dataloader: Function that loads forcings data for Clam population model...
ClamF_pop_equations: Clam bioenergetic population model differential equations...
ClamF_pop_loop: Function that runs the Monte Carlo simulation for the Clam...
ClamF_pop_main: Clam bioenergetic population model (alternative version)
ClamF_pop_post: Postprocess the Clam population bioenergetic model results...
ClamF_pop_pre: Clam bioenergetic population model (alternative version)...
ClamF_pop_RKsolver: Solves the Clam bioenergetic balance (alternative version)...
ClamF_pop_skeleton: Creates the folders structure for Clam population model...
Clam_ind_dataloader: Function that loads forcings data for Clam individual...
Clam_ind_equations: Clam bioenergetic individual model differential equations
Clam_ind_main: Clam bioenergetic individual model
Clam_ind_post: Postprocess the Clam individual bioenergetic model results
Clam_ind_pre: Clam bioenergetic individual model preprocessor
clam_ind_RKsolver: Solves the Clam individual bioenergetic balance with a 4th...
Clam_ind_skeleton: Creates the folders structure for Clam individual...
Clam_pop_dataloader: Function that loads forcings data for Clam population model...
Clam_pop_equations: Clam bioenergetic population model differential equations
Clam_pop_loop: Function that runs the Monte Carlo simulation for the Clam...
Clam_pop_main: Clam bioenergetic population model
Clam_pop_post: Postprocess the Clam population bioenergetic model results
Clam_pop_pre: Clam bioenergetic population model preprocessor
Clam_pop_RKsolver: Solves the Clam bioenergetic balance for population with a...
Clam_pop_skeleton: Creates the folders structure for Clam population model
Mussel_ind_dataloader: Function that loads forcings data for Mussel individual...
Mussel_ind_equations: Mussel bioenergetic individual model differential equations
Mussel_ind_main: Mussel bioenergetic individual model
Mussel_ind_post: Postprocess the Mussel indivual bioenergetic model results
Mussel_ind_pre: Mussel bioenergetic individual model preprocessor
Mussel_ind_RKsolver: Solves the Mussel individual bioenergetic balance with a 4th...
Mussel_ind_skeleton: Creates the folders structure for Mussel individual...
Mussel_pop_dataloader: Function that loads forcings data for Mussel population model...
Mussel_pop_equations: Mussel bioenergetic population model differential equations
Mussel_pop_loop: Function that runs the Monte Carlo simulation for the Mussel...
Mussel_pop_main: Mussel bioenergetic population model
Mussel_pop_post: Postprocess the Mussel population bioenergetic model results
Mussel_pop_pre: Mussel bioenergetic population model preprocessor
Mussel_pop_RKsolver: Solves the Mussel population bioenergetic balance with a 4th...
Mussel_pop_skeleton: Creates the folders structure for Mussel population model
Pop_fun: Function that solves the population dynamics equations...

Functions

Bass_ind_RKsolver Man page Source code
Bass_ind_dataloader Man page Source code
Bass_ind_equations Man page Source code
Bass_ind_main Man page Source code
Bass_ind_post Man page Source code
Bass_ind_pre Man page Source code
Bass_ind_skeleton Man page Source code
Bass_pop_RKsolver Man page Source code
Bass_pop_dataloader Man page Source code
Bass_pop_equations Man page Source code
Bass_pop_loop Man page Source code
Bass_pop_main Man page Source code
Bass_pop_post Man page Source code
Bass_pop_pre Man page Source code
Bass_pop_skeleton Man page Source code
Bream_ind_RKsolver Man page Source code
Bream_ind_dataloader Man page Source code
Bream_ind_equations Man page Source code
Bream_ind_main Man page Source code
Bream_ind_post Man page Source code
Bream_ind_pre Man page Source code
Bream_ind_skeleton Man page Source code
Bream_pop_RKsolver Man page Source code
Bream_pop_dataloader Man page Source code
Bream_pop_equations Man page Source code
Bream_pop_loop Man page Source code
Bream_pop_main Man page Source code
Bream_pop_post Man page Source code
Bream_pop_pre Man page Source code
Bream_pop_skeleton Man page Source code
ClamF_ind_RKsolver Man page Source code
ClamF_ind_dataloader Man page Source code
ClamF_ind_equations Man page Source code
ClamF_ind_main Man page Source code
ClamF_ind_post Man page Source code
ClamF_ind_pre Man page Source code
ClamF_ind_skeleton Man page Source code
ClamF_pop_RKsolver Man page Source code
ClamF_pop_dataloader Man page Source code
ClamF_pop_equations Man page Source code
ClamF_pop_loop Man page Source code
ClamF_pop_main Man page Source code
ClamF_pop_post Man page Source code
ClamF_pop_pre Man page Source code
ClamF_pop_skeleton Man page Source code
Clam_ind_dataloader Man page Source code
Clam_ind_equations Man page Source code
Clam_ind_main Man page Source code
Clam_ind_post Man page Source code
Clam_ind_pre Man page Source code
Clam_ind_skeleton Man page Source code
Clam_pop_RKsolver Man page Source code
Clam_pop_dataloader Man page Source code
Clam_pop_equations Man page Source code
Clam_pop_loop Man page Source code
Clam_pop_main Man page Source code
Clam_pop_post Man page Source code
Clam_pop_pre Man page Source code
Clam_pop_skeleton Man page Source code
Mussel_ind_RKsolver Man page Source code
Mussel_ind_dataloader Man page Source code
Mussel_ind_equations Man page Source code
Mussel_ind_main Man page Source code
Mussel_ind_post Man page Source code
Mussel_ind_pre Man page Source code
Mussel_ind_skeleton Man page Source code
Mussel_pop_RKsolver Man page Source code
Mussel_pop_dataloader Man page Source code
Mussel_pop_equations Man page Source code
Mussel_pop_loop Man page Source code
Mussel_pop_main Man page Source code
Mussel_pop_post Man page Source code
Mussel_pop_pre Man page Source code
Mussel_pop_skeleton Man page Source code
Pop_fun Man page Source code
clam_ind_RKsolver Man page Source code

Files

inst
inst/extdata
inst/extdata/Bass_pop_data
inst/extdata/Bass_pop_data/Food_characterization.csv
inst/extdata/Bass_pop_data/Feeding.csv
inst/extdata/Bass_pop_data/Management.csv
inst/extdata/Bass_pop_data/Population.csv
inst/extdata/Bass_pop_data/Parameters.csv
inst/extdata/Bass_pop_data/Water_temperature.csv
inst/extdata/Bream_pop_data
inst/extdata/Bream_pop_data/Food_characterization.csv
inst/extdata/Bream_pop_data/Feeding.csv
inst/extdata/Bream_pop_data/Management.csv
inst/extdata/Bream_pop_data/Population.csv
inst/extdata/Bream_pop_data/Parameters.csv
inst/extdata/Bream_pop_data/Water_temperature.csv
inst/extdata/Bass_ind_data
inst/extdata/Bass_ind_data/Food_characterization.csv
inst/extdata/Bass_ind_data/Feeding.csv
inst/extdata/Bass_ind_data/Parameters.csv
inst/extdata/Bass_ind_data/Water_temperature.csv
inst/extdata/Clam_pop_data
inst/extdata/Clam_pop_data/Chlorophyll_a.csv
inst/extdata/Clam_pop_data/POM.csv
inst/extdata/Clam_pop_data/Management.csv
inst/extdata/Clam_pop_data/Population.csv
inst/extdata/Clam_pop_data/Parameters.csv
inst/extdata/Clam_pop_data/POC.csv
inst/extdata/Clam_pop_data/TSM.csv
inst/extdata/Clam_pop_data/Water_temperature.csv
inst/extdata/Bream_ind_data
inst/extdata/Bream_ind_data/Food_characterization.csv
inst/extdata/Bream_ind_data/Feeding.csv
inst/extdata/Bream_ind_data/Parameters.csv
inst/extdata/Bream_ind_data/Water_temperature.csv
inst/extdata/ClamF_ind_data
inst/extdata/ClamF_ind_data/Chlorophyll_a.csv
inst/extdata/ClamF_ind_data/Parameters.csv
inst/extdata/ClamF_ind_data/Water_temperature.csv
inst/extdata/ClamF_pop_data
inst/extdata/ClamF_pop_data/Chlorophyll_a.csv
inst/extdata/ClamF_pop_data/Management.csv
inst/extdata/ClamF_pop_data/Population.csv
inst/extdata/ClamF_pop_data/Parameters.csv
inst/extdata/ClamF_pop_data/Water_temperature.csv
inst/extdata/Mussel_pop_data
inst/extdata/Mussel_pop_data/Chlorophyll_a.csv
inst/extdata/Mussel_pop_data/POM.csv
inst/extdata/Mussel_pop_data/POC_characterization.csv
inst/extdata/Mussel_pop_data/Management.csv
inst/extdata/Mussel_pop_data/Population.csv
inst/extdata/Mussel_pop_data/Parameters.csv
inst/extdata/Mussel_pop_data/POC.csv
inst/extdata/Mussel_pop_data/TSM.csv
inst/extdata/Mussel_pop_data/Water_temperature.csv
inst/extdata/Clam_ind_data
inst/extdata/Clam_ind_data/Chlorophyll_a.csv
inst/extdata/Clam_ind_data/POM.csv
inst/extdata/Clam_ind_data/Parameters.csv
inst/extdata/Clam_ind_data/POC.csv
inst/extdata/Clam_ind_data/TSM.csv
inst/extdata/Clam_ind_data/Water_temperature.csv
inst/extdata/Mussel_ind_data
inst/extdata/Mussel_ind_data/Chlorophyll_a.csv
inst/extdata/Mussel_ind_data/POM.csv
inst/extdata/Mussel_ind_data/POC_characterization.csv
inst/extdata/Mussel_ind_data/Parameters.csv
inst/extdata/Mussel_ind_data/POC.csv
inst/extdata/Mussel_ind_data/TSM.csv
inst/extdata/Mussel_ind_data/Water_temperature.csv
inst/doc
inst/doc/vignette.Rmd
inst/doc/vignette.html
NAMESPACE
R
R/Bream_pop_skeleton.R
R/Clam_ind_dataloader.R
R/Clam_pop_skeleton.R
R/ClamF_ind_dataloader.R
R/Clam_ind_pre.R
R/Mussel_ind_pre.R
R/Bass_pop_equations.R
R/ClamF_ind_RKsolver.R
R/Clam_pop_loop.R
R/Bass_pop_skeleton.R
R/Bream_pop_post.R
R/Bream_ind_main.R
R/ClamF_pop_skeleton.R
R/Bream_pop_loop.R
R/Mussel_pop_loop.R
R/Clam_pop_post.R
R/Mussel_ind_main.R
R/ClamF_ind_skeleton.R
R/Bream_ind_post.R
R/ClamF_pop_post.R
R/Bream_ind_skeleton.R
R/Bass_ind_RKsolver.R
R/Clam_pop_main.R
R/Mussel_ind_equations.R
R/Clam_pop_pre.R
R/Mussel_pop_skeleton.R
R/ClamF_pop_RKsolver.R
R/Pop_fun.R
R/ClamF_ind_main.R
R/Bass_pop_main.R
R/Mussel_ind_skeleton.R
R/Bass_pop_loop.R
R/Mussel_pop_RKsolver.R
R/Clam_ind_skeleton.R
R/Bass_pop_pre.R
R/Clam_ind_equations.R
R/Bream_ind_dataloader.R
R/ClamF_pop_main.R
R/ClamF_ind_pre.R
R/Bass_pop_dataloader.R
R/Mussel_pop_pre.R
R/Clam_pop_equations.R
R/ClamF_ind_post.R
R/Mussel_pop_dataloader.R
R/Bream_ind_RKsolver.R
R/Bream_pop_main.R
R/Mussel_ind_post.R
R/ClamF_ind_equations.R
R/Clam_ind_RKsolver.R
R/Bass_ind_skeleton.R
R/Clam_ind_post.R
R/Bream_ind_equations.R
R/Mussel_pop_post.R
R/Bream_pop_equations.R
R/Bass_ind_equations.R
R/Bass_pop_post.R
R/Clam_ind_main.R
R/Bass_pop_RKsolver.R
R/ClamF_pop_dataloader.R
R/Bass_ind_post.R
R/Bream_pop_dataloader.R
R/Mussel_pop_equations.R
R/ClamF_pop_loop.R
R/Clam_pop_dataloader.R
R/Mussel_pop_main.R
R/Mussel_ind_RKsolver.R
R/Bream_ind_pre.R
R/Bream_pop_pre.R
R/ClamF_pop_pre.R
R/Bass_ind_main.R
R/Bass_ind_dataloader.R
R/Bream_pop_RKsolver.R
R/Mussel_ind_dataloader.R
R/Bass_ind_pre.R
R/ClamF_pop_equations.R
R/Clam_pop_RKsolver.R
vignettes
vignettes/vignette.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/Clam_ind_equations.Rd
man/Bass_ind_main.Rd
man/ClamF_ind_post.Rd
man/Clam_pop_skeleton.Rd
man/Bream_pop_RKsolver.Rd
man/Bream_pop_skeleton.Rd
man/Bass_pop_main.Rd
man/Bass_pop_pre.Rd
man/ClamF_ind_pre.Rd
man/ClamF_ind_equations.Rd
man/Mussel_ind_RKsolver.Rd
man/Bream_ind_skeleton.Rd
man/Bream_pop_equations.Rd
man/Bass_pop_skeleton.Rd
man/Bream_pop_main.Rd
man/ClamF_ind_main.Rd
man/Bass_ind_pre.Rd
man/Bass_ind_post.Rd
man/Bream_pop_loop.Rd
man/Mussel_pop_loop.Rd
man/Bass_ind_RKsolver.Rd
man/Mussel_ind_dataloader.Rd
man/Mussel_pop_main.Rd
man/Bream_ind_RKsolver.Rd
man/Bream_pop_post.Rd
man/Clam_pop_RKsolver.Rd
man/Clam_pop_dataloader.Rd
man/Mussel_pop_RKsolver.Rd
man/Bass_ind_skeleton.Rd
man/ClamF_pop_dataloader.Rd
man/Clam_ind_skeleton.Rd
man/clam_ind_RKsolver.Rd
man/Bass_pop_post.Rd
man/Pop_fun.Rd
man/Bream_ind_equations.Rd
man/Mussel_ind_equations.Rd
man/Bream_pop_pre.Rd
man/ClamF_pop_skeleton.Rd
man/Bream_pop_dataloader.Rd
man/Bass_pop_RKsolver.Rd
man/ClamF_pop_post.Rd
man/Bream_ind_post.Rd
man/Mussel_pop_post.Rd
man/Clam_pop_post.Rd
man/Mussel_pop_pre.Rd
man/ClamF_ind_dataloader.Rd
man/Bass_pop_dataloader.Rd
man/Bass_ind_equations.Rd
man/Clam_ind_post.Rd
man/Clam_ind_main.Rd
man/Clam_pop_equations.Rd
man/ClamF_pop_RKsolver.Rd
man/Mussel_ind_main.Rd
man/Clam_pop_loop.Rd
man/Mussel_pop_equations.Rd
man/Clam_pop_pre.Rd
man/ClamF_pop_pre.Rd
man/Mussel_pop_skeleton.Rd
man/Bass_ind_dataloader.Rd
man/Mussel_ind_skeleton.Rd
man/Mussel_pop_dataloader.Rd
man/ClamF_ind_RKsolver.Rd
man/Bass_pop_equations.Rd
man/Bream_ind_main.Rd
man/Clam_pop_main.Rd
man/Clam_ind_pre.Rd
man/Bream_ind_pre.Rd
man/Bream_ind_dataloader.Rd
man/Mussel_ind_post.Rd
man/Bass_pop_loop.Rd
man/Mussel_ind_pre.Rd
man/Clam_ind_dataloader.Rd
man/ClamF_pop_equations.Rd
man/ClamF_pop_loop.Rd
man/ClamF_ind_skeleton.Rd
man/ClamF_pop_main.Rd
LICENSE
RAC documentation built on May 19, 2017, 6:02 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.