vis_snps: Visualize the effect of varying a stacks parameter on the...
In RADstackshelpR: Optimize the De Novo Stacks Pipeline via R
Description
Usage
Arguments
Value
Examples
Description
This function takes the list of dataframes output by optimize_m(), optimize_M(), or optimize_n() as input.
The function then uses ggplot2 to visualize the effect of the given stacks on the number of SNPs retained.
Usage
1
Arguments
output
A list containing 5 dataframes generated by optimize_m()
stacks_param
A character string indicating the stacks parameter iterated over
Value
A plot showing the number of SNPs retained at each given parameter value
Examples
1
2
3
vis_snps(output=
readRDS(system.file("extdata","optimize.m.output.RDS",package="RADstackshelpR",mustWork=TRUE)),
stacks_param = "m")
RADstackshelpR documentation built on Aug. 19, 2021, 5:06 p.m.
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Description Usage Arguments Value Examples
Description
This function takes the list of dataframes output by optimize_m(), optimize_M(), or optimize_n() as input. The function then uses ggplot2 to visualize the effect of the given stacks on the number of SNPs retained.
Usage
1 |
Arguments
output |
A list containing 5 dataframes generated by optimize_m() |
stacks_param |
A character string indicating the stacks parameter iterated over |
Value
A plot showing the number of SNPs retained at each given parameter value
Examples
1 2 3 | vis_snps(output=
readRDS(system.file("extdata","optimize.m.output.RDS",package="RADstackshelpR",mustWork=TRUE)),
stacks_param = "m")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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