RAPIDR: Reliable Accurate Prenatal non-Invasive Diagnosis R package

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Package to perform non-invasive fetal testing for aneuploidies using sequencing count data from cell-free DNA

Author
Kitty Lo <kitty.lo@ucl.ac.uk>
Date of publication
2014-11-20 18:16:37
Maintainer
Kitty Lo <kitty.lo@ucl.ac.uk>
License
GPL-3
Version
0.1.1

View on CRAN

Man pages

BinBam
BinBam
createReferenceSetFromCounts
createReferenceSetFromCounts
evalPerformance
evalPerformance
gcContent
gcContent in 20kb bins
makeBinnedCountsFile
makeBinnedCountsFile
makeGCContentData
makeGCContentData
makeGCContentPerPos
makeGCContentPerPos
outcomes
set of simulated outcomes data
plotTestSample
plotTestSample
print.rapidr.ref
print.rapidr.ref
print.rapidr.test
print.rapidr.test
ReadBed
ReadBed
testUnknowns
testUnknowns
writeCleanedCountsFile
writeCleanedCountsFiles
writeResultsToFile
writeResultsToFile

Files in this package

RAPIDR
RAPIDR/inst
RAPIDR/inst/doc
RAPIDR/inst/doc/rapidr-vignette.rnw
RAPIDR/inst/doc/rapidr-vignette.pdf
RAPIDR/inst/doc/rapidr-vignette.R
RAPIDR/NAMESPACE
RAPIDR/demo
RAPIDR/demo/00Index
RAPIDR/demo/doNIPT.R
RAPIDR/NEWS
RAPIDR/data
RAPIDR/data/gcContent.rda
RAPIDR/data/datalist
RAPIDR/data/outcomes.rda
RAPIDR/R
RAPIDR/R/testUnknowns.R
RAPIDR/R/helpFunctions.R
RAPIDR/R/PCA.R
RAPIDR/R/gcContent-data.R
RAPIDR/R/print-methods.R
RAPIDR/R/rapidr-package.R
RAPIDR/R/outcomes-data.R
RAPIDR/R/createReference.R
RAPIDR/R/evalPerformance.R
RAPIDR/vignettes
RAPIDR/vignettes/rapidr-vignette.rnw
RAPIDR/vignettes/workflow.png
RAPIDR/MD5
RAPIDR/build
RAPIDR/build/vignette.rds
RAPIDR/DESCRIPTION
RAPIDR/man
RAPIDR/man/testUnknowns.Rd
RAPIDR/man/gcContent.Rd
RAPIDR/man/makeGCContentPerPos.Rd
RAPIDR/man/print.rapidr.test.Rd
RAPIDR/man/writeCleanedCountsFile.Rd
RAPIDR/man/plotTestSample.Rd
RAPIDR/man/ReadBed.Rd
RAPIDR/man/makeGCContentData.Rd
RAPIDR/man/createReferenceSetFromCounts.Rd
RAPIDR/man/print.rapidr.ref.Rd
RAPIDR/man/evalPerformance.Rd
RAPIDR/man/makeBinnedCountsFile.Rd
RAPIDR/man/outcomes.Rd
RAPIDR/man/BinBam.Rd
RAPIDR/man/writeResultsToFile.Rd