RChronoModel: Post-Processing of the Markov Chain Simulated by ChronoModel

Provides a list of functions for the statistical analysis and the post-processing of the Markov Chains simulated by ChronoModel (see <http://www.chronomodel.fr> for more information). ChronoModel is a friendly software to construct a chronological model in a Bayesian framework. Its output is a sampled Markov chain from the posterior distribution of dates component the chronology.

Author
Anne Philippe and Marie-Anne Vibet
Date of publication
2016-10-04 18:53:09
Maintainer
Anne Philippe <anne.philippe@univ-nantes.fr>
License
GPL
Version
0.3
URLs

View on CRAN

Man pages

CredibleInterval
Bayesian credible interval
DatesHiatus
Test for the existence of a hiatus between two parameters
Events
Events
ImportCSV
Importing a CSV file containing the output of the MCMC...
MarginalPlot
Plot of a marginal posterior density
MarginalProba
Bayesian test for anteriority / posteriority between two...
MarginalStatistics
Marginal summary statistics
MultiCredibleInterval
Bayesian credible intervals for a series of dates
MultiDatesPlot
Plot of the endpoints of credible intervals or HPD intervals...
MultiHPD
Bayesian highest posterior density regions for a series of...
MultiPhasePlot
Plot of the marginal posterior densities of several phases
MultiPhasesGap
Gap/Hiatus between a succession of phases (for phases in...
MultiPhasesTransition
Transition range for a succession of phases (for phases in...
MultiPhaseTimeRange
Phase Time Range for multiple phases
MultiSuccessionPlot
Successive Phases Density Plots (for phases in temporal order...
PhaseDurationPlot
Plot of the marginal posterior densities of the duration of a...
PhasePlot
Plot of the marginal posterior densities of a phase
Phases
Phases
PhasesGap
Gap or Hiatus between two successive phases (for phases in...
PhaseStatistics
Summary statistics for a phase
PhasesTransition
Transition range between two successive phases (for phases in...
PhaseTimeRange
Phase Time Range
SuccessionPlot
Density Plots of two successive phases (for phases in...
TempoActivityPlot
Plot of the activity of events
TempoPlot
Plot of the occurence of events

Files in this package

RChronoModel
RChronoModel/NAMESPACE
RChronoModel/data
RChronoModel/data/Events.RData
RChronoModel/data/Phases.RData
RChronoModel/R
RChronoModel/R/prog.R
RChronoModel/MD5
RChronoModel/DESCRIPTION
RChronoModel/man
RChronoModel/man/ImportCSV.Rd
RChronoModel/man/TempoActivityPlot.Rd
RChronoModel/man/MultiPhasesGap.Rd
RChronoModel/man/SuccessionPlot.Rd
RChronoModel/man/PhasesTransition.Rd
RChronoModel/man/PhaseStatistics.Rd
RChronoModel/man/MultiPhasePlot.Rd
RChronoModel/man/PhaseDurationPlot.Rd
RChronoModel/man/MultiPhaseTimeRange.Rd
RChronoModel/man/MultiPhasesTransition.Rd
RChronoModel/man/Phases.Rd
RChronoModel/man/Events.Rd
RChronoModel/man/MultiSuccessionPlot.Rd
RChronoModel/man/MarginalProba.Rd
RChronoModel/man/PhasePlot.Rd
RChronoModel/man/DatesHiatus.Rd
RChronoModel/man/PhasesGap.Rd
RChronoModel/man/MultiCredibleInterval.Rd
RChronoModel/man/TempoPlot.Rd
RChronoModel/man/MultiDatesPlot.Rd
RChronoModel/man/CredibleInterval.Rd
RChronoModel/man/PhaseTimeRange.Rd
RChronoModel/man/MarginalPlot.Rd
RChronoModel/man/MultiHPD.Rd
RChronoModel/man/MarginalStatistics.Rd