inst/doc/Database-creation.R

In REDCapCAST: REDCap Metadata Casting and Castellated Data Handling

## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

## ----setup--------------------------------------------------------------------
library(REDCapCAST)

## ----eval=FALSE---------------------------------------------------------------
# d1 <- mtcars |>
#   dplyr::mutate(record_id = seq_len(dplyr::n())) |>
#   ds2dd()
# 
# d1 |>
#   gt::gt()

## ----eval=FALSE---------------------------------------------------------------
# d2 <- REDCapCAST::redcapcast_data |>
#   dplyr::mutate(record_id = seq_len(dplyr::n()),
#                 region=factor(region)) |>
#   dplyr::select(record_id, dplyr::everything()) |>
#   (\(.x){
#     .x[!grepl("_complete$",names(.x))]
#   })() |>
#   (\(.x){
#     .x[!grepl("^redcap",names(.x))]
#   })() |>
#   ds2dd_detailed() |>
#   purrr::pluck("meta")
# 
# d2 |>
#   gt::gt()

## ----eval=FALSE---------------------------------------------------------------
# write.csv(dd_ls$meta, "datadictionary.csv")

## ----eval=FALSE---------------------------------------------------------------
# REDCapR::redcap_metadata_write(
#   dd_ls$meta,
#   redcap_uri = keyring::key_get("DB_URI"),
#   token = keyring::key_get("DB_TOKEN")
# )

## ----eval=FALSE---------------------------------------------------------------
# REDCapR::redcap_write(
#   dd_ls$data,
#   redcap_uri = keyring::key_get("DB_URI"),
#   token = keyring::key_get("DB_TOKEN")
# )