Description Usage Arguments Value Author(s) See Also
Internal function used to predict the enhancer activity of either DMRs or query regions.
1 2 3 | reptile_predict_one_mode(reptile_classifier,
epimark,
family)
|
reptile_classifier |
An object of class |
epimark |
data.frame instance from read_epigenomic_data, which containing intensity and intensity deviation values of each mark for each query region |
family |
classifier family used in the enhancer model Default: RandomForest Classifiers available: - RandomForest: random forest - Logistic: logistic regression |
A vecotr of enhancer score of each query region or DMR
Yupeng He yupeng.he.bioinfo@gmail.com
reptile_predict
,
reptile_predict_genome_wide
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