Internal - predicting enhancer activity of DMRs or query regions

Description

Internal function used to predict the enhancer activity of either DMRs or query regions.

Usage

1
2
3
reptile_predict_one_mode(reptile_classifier,
                         epimark,
                         family)

Arguments

reptile_classifier

An object of class randomForest or glm when family is set to be "Logistic".

epimark

data.frame instance from read_epigenomic_data, which containing intensity and intensity deviation values of each mark for each query region

family

classifier family used in the enhancer model

Default: RandomForest

Classifiers available:

- RandomForest: random forest

- Logistic: logistic regression

Value

A vecotr of enhancer score of each query region or DMR

Author(s)

Yupeng He yupeng.he.bioinfo@gmail.com

See Also

reptile_predict, reptile_predict_genome_wide