RFlocalfdr Report

In RFlocalfdr: Significance Level for Random Forest Impurity Importance Scores

knitr::opts_chunk$set(echo = TRUE)
# knitr::opts_chunk$set(echo = TRUE, fig.width = 12, fig.height = 12)

library(knitr)

Initial plots

knitr::include_graphics("density_importances.png")

The data

knitr::include_graphics("histogram_of_variable_importances.png")

Spline and count fit

knitr::include_graphics("histogram_of_variable_importances.png")

 knitr::include_graphics("density_importances2.png") 

density importances 2

knitr::include_graphics("fit_to_data_set_initial.png") 

fit to data set initial

knitr::include_graphics("local_fdr_initial.png") 

local fdr initial

determine the value "C"

knitr::include_graphics("determine_cc.png") 

determine cc

knitr::include_graphics("compare_C_and_cc_and_the_resulting_fits.png") 

compare_C_and_cc_and_the_resulting_fits.png"

knitr::include_graphics("fit_to_data_set_C.png") 

fit to data set C

knitr::include_graphics("fit_to_data_set_cc.png") 

fit to data set cc

knitr::include_graphics("compare_C_and_cc_and_the_resulting_fits_2.png") 

compare C and cc and the resulting fits2

final plots

knitr::include_graphics("fit_to_data_set_final.png") 

fit to data set final

knitr::include_graphics("fit.to.data.set_df2.png") 

fit to data set df2

knitr::include_graphics("local_fdr_final.png") 

local fdr final

RFlocalfdr documentation built on April 4, 2025, 5:16 a.m.