| summary.rfmstate | R Documentation |
Provides a comprehensive summary of the fitted model including per-origin state information, OOB prediction error, and transition event counts.
## S3 method for class 'rfmstate'
summary(object, ...)
object |
A fitted |
... |
Ignored. |
The per-edge OOB concordance is 1 - prediction.error from
ranger for that edge's binary cause-specific endpoint. The printed summary
also lists every forwarded ranger argument.
An object of class "summary.rfmstate" containing the stored
call, covariates, forest parameters, patient/event/interval totals,
structure, and a per-edge table of risk-set size, target events,
competing/non-target exits, external censoring, ranger OOB error,
ranger OOB concordance, and verified OOB coverage.
Edge OOB values do not validate assembled full-state probabilities and may
be unstable for sparse transitions. Use diagnose(..., method = "cv")
for patient-level held-out full-state Brier scoring.
ms <- clinical_states()
dat <- sim_clinical_data(n = 200, structure = ms, seed = 42)
msdata <- prepare_data(
data = dat, id = "ID", structure = ms,
time_map = list(
Responded = "time_Responded",
Unresponded = "time_Unresponded",
Stabilized = "time_Stabilized",
Progressed = "time_Progressed",
Death = "time_Death"
),
censor_col = "time_censored",
covariates = c("age", "sex", "BMI", "treatment")
)
fit <- rfmstate(msdata, num.trees = 100, seed = 42)
summary(fit)
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