RGEgibbs: Response from Genotype to Environment

In RGE: Response from Genotype to Environment

Description

This function performance the GIBBS sampler for analyze reginals trials.

Usage

RGEgibbs(data, gen_c, env_c, blk_c, y_c, prior.g = NULL,
        prior.vg =NULL,prior.b = NULL, prior.dfb = NULL,
        prior.sv = NULL, prior.dfsv = NULL, prior.se = NULL, 
        prior.dfse = NULL,
        burnin = 10, thin = 5, niter = 50, saveAt = 10)

Arguments

data	data.frame
gen_c	Number of the column from de data.frame with the genotypes information.
env_c	Number of the column from de data.frame with the environment information.
blk_c	Number of the column from de data.frame with the block information.
y_c	Number of the column from de data.frame with the phenotype information.
prior.g	Vector with prior information of the means of genotypes
prior.vg	Vector with prior information of the variances of the means of genotypes
prior.b	Vector with prior information of the variances of block within environment
prior.dfb	Vector with prior information of hyperparameter degree of credibility of the variances of block within environment.
prior.sv	Vector with prior information of the stability's variances
prior.dfsv	Vector with prior information of hyperparameter degree of credibility of the stability's variances.
prior.se	Vector with prior information of the error's variances
prior.dfse	Vector with prior information of hyperparameter degree of credibility of the variances of error.
burnin	Number of iteration to be consider as burn-in period. This period is not saved in the final result.
thin	The thinning interval between consecutive observations. This interval is not saved in the final result.
niter	Numbers of iterations to be saved
saveAt	Save object outtS4 with samples of the posterior distribution on the work directory each "saveAt" iteration

Value

Matrix with samples of the posterior distribution

Author(s)

Jose Miguel Cotes Torres [e-mail]

References

Cotes Torres, J. M., Gonzalez Jaimes, E. P., & Cotes Torres, A. (2016). Seleccion de Genotipos con Alta Respuesta y Estabilidad Fenotipica en Pruebas Regionales: Recuperando el Concepto Biologico. Revista Facultad De Ciencias Basicas, 8(2), 226-243.

Examples

##data(datos)
##m<-RGEgibbs(data=datos,gen_c=5,env_c=1,blk_c=4,y_c=9,
##thin=5,burnin=100,niter=10000,saveAt=1000)

RGE documentation built on Oct. 29, 2021, 1:07 a.m.