addGrid | Add a grid to an existing plot. |
as.rgb | Convert color-names or RGB-code to possibly semi-transparent... |
BoxCox | One-parameter Box-Cox transformation. |
computeDirect | Function to simulate the direct method |
computePerfMeas | Function for computing performance measurements |
computePerfMeasAll | Function for computing reference intervals for all markers |
computeRIs | Function for computing reference intervals |
computeRIsAll | Function for computing reference intervals for all markers |
computeRuntimeAll | Function to compute runtime statistics for all analytes |
computeSubResults | Helper function to compute the subscores for the distribution... |
defineSubset | Function for defining a subset that is used for analyizing... |
evaluateAlgorithmResults | Convenience Function to generate all result plots and... |
evaluateBiomarkerTestSets | Wrapper function to evaluate all test sets or a specified... |
formatNumber | Rounding method with trailing zeros. |
generateBiomarkerTestSets | Convenience function to generate simulated data and save each... |
generateBoxPlotOneAnalyte | Wrapper function to generate one boxplot for a specified... |
generateBoxplotsDistTypes | Wrapper function to generate all boxplots for the specified... |
generateBoxplotsMultipleCats | Wrapper function to generate all boxplots for the specified... |
generateDataFiles | Generate simulated data with one start seed for each... |
generateMD5 | Generate an MD5 hash sum for any R object. |
generateScatterplotsAll | Wrapper function to generate scatterplots for the specified... |
getBenchmarkResults | Computing benchmark table with the mean overall results. |
getRI | Method to calculate reference intervals (percentiles) for... |
getRIsAllwithoutModel | Function for retrieving reference intervals if directly... |
getRuntime | Helper function to compute runtime statistics |
getSubset | Function to group the data according to a specified feature. |
getSubsetForDefinedCats | Function to group the data according to a specified feature. |
invBoxCox | Inverse of the one-parameter Box-Cox transformation. |
loadTestsetDefinition | Convenience function to load the table with the information... |
mergeAnalytes | Function to combine analytes for defined categories |
mergeSummaryErrors | Helper function to combine all computed summary errors |
plotBarplot | Plot method for generating a barplot out of the benchmark... |
plotBoxplot | Plot method for generating a boxplot of the benchmark results |
plotScatterplot | Plot method for generating a scatterplot |
print.RWDRI | Standard print method for objects of class 'RWDRI' |
progressInd | Function for setting up the progress indicator. |
readResultFiles | Function for reading in the result files for one marker |
readResultFilesAll | Function for reading all results files. |
readResultsAndComputeErrors | Function to read the result files and compute performance... |
restrictSet | Function to get error subsets for defined category and... |
RIbench-Package | RIbench: Benchmark Suite for the Standardized Evaluation of... |
runDirectMethod | Convenience function to simulate the direct method for the... |
runTC_usingRscript | Function for running test sets per algorithm per marker with... |
setupDirStructure | Convenience function to set up the directory structure used... |
writeResFile | Helper function to write result file when time out occured or... |
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