Man pages for RIbench
Benchmark Suite for Indirect Methods for RI Estimation
| addGrid | Add a grid to an existing plot. |
| as.rgb | Convert color-names or RGB-code to possibly semi-transparent... |
| BoxCox | One-parameter Box-Cox transformation. |
| computeDirect | Function to simulate the direct method |
| computePerfMeas | Function for computing performance measurements |
| computePerfMeasAll | Function for computing reference intervals for all markers |
| computeRIs | Function for computing reference intervals |
| computeRIsAll | Function for computing reference intervals for all markers |
| computeRuntimeAll | Function to compute runtime statistics for all analytes |
| computeSubResults | Helper function to compute the subscores for the distribution... |
| defineSubset | Function for defining a subset that is used for analyizing... |
| evaluateAlgorithmResults | Convenience Function to generate all result plots and... |
| evaluateBiomarkerTestSets | Wrapper function to evaluate all test sets or a specified... |
| formatNumber | Rounding method with trailing zeros. |
| generateBiomarkerTestSets | Convenience function to generate simulated data and save each... |
| generateBoxPlotOneAnalyte | Wrapper function to generate one boxplot for a specified... |
| generateBoxplotsDistTypes | Wrapper function to generate all boxplots for the specified... |
| generateBoxplotsMultipleCats | Wrapper function to generate all boxplots for the specified... |
| generateDataFiles | Generate simulated data with one start seed for each... |
| generateMD5 | Generate an MD5 hash sum for any R object. |
| generateScatterplotsAll | Wrapper function to generate scatterplots for the specified... |
| getBenchmarkResults | Computing benchmark table with the mean overall results. |
| getRI | Method to calculate reference intervals (percentiles) for... |
| getRIsAllwithoutModel | Function for retrieving reference intervals if directly... |
| getRuntime | Helper function to compute runtime statistics |
| getSubset | Function to group the data according to a specified feature. |
| getSubsetForDefinedCats | Function to group the data according to a specified feature. |
| invBoxCox | Inverse of the one-parameter Box-Cox transformation. |
| loadTestsetDefinition | Convenience function to load the table with the information... |
| mergeAnalytes | Function to combine analytes for defined categories |
| mergeSummaryErrors | Helper function to combine all computed summary errors |
| plotBarplot | Plot method for generating a barplot out of the benchmark... |
| plotBoxplot | Plot method for generating a boxplot of the benchmark results |
| plotScatterplot | Plot method for generating a scatterplot |
| print.RWDRI | Standard print method for objects of class 'RWDRI' |
| progressInd | Function for setting up the progress indicator. |
| readResultFiles | Function for reading in the result files for one marker |
| readResultFilesAll | Function for reading all results files. |
| readResultsAndComputeErrors | Function to read the result files and compute performance... |
| restrictSet | Function to get error subsets for defined category and... |
| RIbench-Package | RIbench: Benchmark Suite for the Standardized Evaluation of... |
| runDirectMethod | Convenience function to simulate the direct method for the... |
| runTC_usingRscript | Function for running test sets per algorithm per marker with... |
| setupDirStructure | Convenience function to set up the directory structure used... |
| writeResFile | Helper function to write result file when time out occured or... |
