RMC: Functions for fitting Markov models

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Functions for fitting, diagnosing and predicting from a class of Markov models.

Author
Scott D. Foster
Date of publication
2010-11-08 07:27:02
Maintainer
Scott Foster <scott.foster@csiro.au>
License
GPL (>= 2)
Version
0.2

View on CRAN

Man pages

dataEG1
Simulated stationary data used in Foster and Bravington...
dataEG2
Simulated non-stationary data used in Foster and Bravington...
dataEG3movement
Simulated data, illustrating an outlying movement residual,...
dataEG3patch
Simulated data, illustrating an outlying patch residual, used...
dataEG4
Simulated non-stationary data used in Foster and Bravington...
diagnos
Calculation of Markov residuals for discrete-time...
examplesForDiagnostics
The examples section of this help file provides code to...
hrplot
Plot horizontal residual plots for a RMC model.
MVfill
Fill in missing values via a single imputation from the...
RMC.mod
Estimation of categorical discrete-time non-stationary Markov...
RMC_overview
Package Description
RMC.pred
Prediction of local area stationary distribution for an...
sim.chain
Simulate Markov chain data from a Markov model.
simRandWalk
Simulate a continuous auto-regressive process.

Files in this package

RMC
RMC/INDEX
RMC/man
RMC/man/examplesForDiagnostics.Rd
RMC/man/RMC.pred.Rd
RMC/man/dataEG3movement.Rd
RMC/man/RMC_overview.Rd
RMC/man/hrplot.Rd
RMC/man/dataEG2.Rd
RMC/man/dataEG4.Rd
RMC/man/diagnos.Rd
RMC/man/sim.chain.Rd
RMC/man/dataEG3patch.Rd
RMC/man/MVfill.Rd
RMC/man/simRandWalk.Rd
RMC/man/dataEG1.Rd
RMC/man/RMC.mod.Rd
RMC/R
RMC/R/sysdata.rda
RMC/R/RMC.R
RMC/src
RMC/src/RMC.h
RMC/src/simChains.cpp
RMC/src/cppad
RMC/src/cppad/config.h
RMC/src/cppad/ode_gear_control.hpp
RMC/src/cppad/near_equal.hpp
RMC/src/cppad/vector.hpp
RMC/src/cppad/local
RMC/src/cppad/local/near_equal_ext.hpp
RMC/src/cppad/local/rev_hes_sweep.hpp
RMC/src/cppad/local/bool_valued.hpp
RMC/src/cppad/local/unary_plus.hpp
RMC/src/cppad/local/fun_check.hpp
RMC/src/cppad/local/value.hpp
RMC/src/cppad/local/arithmetic.hpp
RMC/src/cppad/local/unary_minus.hpp
RMC/src/cppad/local/math_other.hpp
RMC/src/cppad/local/add_eq.hpp
RMC/src/cppad/local/mul_op.hpp
RMC/src/cppad/local/print_for.hpp
RMC/src/cppad/local/ad_binary.hpp
RMC/src/cppad/local/output.hpp
RMC/src/cppad/local/drivers.hpp
RMC/src/cppad/local/op.hpp
RMC/src/cppad/local/user_ad.hpp
RMC/src/cppad/local/acos_op.hpp
RMC/src/cppad/local/sub_op.hpp
RMC/src/cppad/local/rev_sparse_hes.hpp
RMC/src/cppad/local/rev_sparse_jac.hpp
RMC/src/cppad/local/sub.hpp
RMC/src/cppad/local/rev_one.hpp
RMC/src/cppad/local/bender_quad.hpp
RMC/src/cppad/local/for_one.hpp
RMC/src/cppad/local/tape_rec.hpp
RMC/src/cppad/local/mul_eq.hpp
RMC/src/cppad/local/rev_two.hpp
RMC/src/cppad/local/par_var.hpp
RMC/src/cppad/local/reverse.hpp
RMC/src/cppad/local/dependent.hpp
RMC/src/cppad/local/vec_ad.hpp
RMC/src/cppad/local/reverse_sweep.hpp
RMC/src/cppad/local/forward.hpp
RMC/src/cppad/local/add.hpp
RMC/src/cppad/local/equal_op_seq.hpp
RMC/src/cppad/local/ad_tape.hpp
RMC/src/cppad/local/log_op.hpp
RMC/src/cppad/local/var2par.hpp
RMC/src/cppad/local/convert.hpp
RMC/src/cppad/local/ordered.hpp
RMC/src/cppad/local/cap_taylor.hpp
RMC/src/cppad/local/ad_copy.hpp
RMC/src/cppad/local/declare.hpp
RMC/src/cppad/local/independent.hpp
RMC/src/cppad/local/std_math_unary.hpp
RMC/src/cppad/local/for_two.hpp
RMC/src/cppad/local/identical.hpp
RMC/src/cppad/local/define.hpp
RMC/src/cppad/local/bool_fun_link.hpp
RMC/src/cppad/local/jacobian.hpp
RMC/src/cppad/local/abs_op.hpp
RMC/src/cppad/local/div_eq.hpp
RMC/src/cppad/local/ad_fun.hpp
RMC/src/cppad/local/integer.hpp
RMC/src/cppad/local/mul.hpp
RMC/src/cppad/local/cppad_error.hpp
RMC/src/cppad/local/omp_max_thread.hpp
RMC/src/cppad/local/abs.hpp
RMC/src/cppad/local/op_code.hpp
RMC/src/cppad/local/default.hpp
RMC/src/cppad/local/compute_assign.hpp
RMC/src/cppad/local/compare.hpp
RMC/src/cppad/local/tape_link.hpp
RMC/src/cppad/local/discrete.hpp
RMC/src/cppad/local/sparse.hpp
RMC/src/cppad/local/lu_ratio.hpp
RMC/src/cppad/local/div.hpp
RMC/src/cppad/local/sqrt_op.hpp
RMC/src/cppad/local/ad.hpp
RMC/src/cppad/local/atan_op.hpp
RMC/src/cppad/local/undef.hpp
RMC/src/cppad/local/atan2.hpp
RMC/src/cppad/local/hessian.hpp
RMC/src/cppad/local/erf.hpp
RMC/src/cppad/local/cppad_vector.hpp
RMC/src/cppad/local/add_op.hpp
RMC/src/cppad/local/cond_exp.hpp
RMC/src/cppad/local/asin_op.hpp
RMC/src/cppad/local/sub_eq.hpp
RMC/src/cppad/local/preprocessor.hpp
RMC/src/cppad/local/rev_jac_sweep.hpp
RMC/src/cppad/local/div_op.hpp
RMC/src/cppad/local/forward_sweep.hpp
RMC/src/cppad/local/fun_construct.hpp
RMC/src/cppad/local/bool_fun.hpp
RMC/src/cppad/local/for_sparse_jac.hpp
RMC/src/cppad/local/fun_eval.hpp
RMC/src/cppad/local/pow.hpp
RMC/src/cppad/local/for_jac_sweep.hpp
RMC/src/cppad/local/ad_valued.hpp
RMC/src/cppad/local/exp_op.hpp
RMC/src/cppad/local/sin_cos.hpp
RMC/src/cppad/CheckNumericType.h
RMC/src/cppad/rosen_34.hpp
RMC/src/cppad/LuFactor.h
RMC/src/cppad/romberg_one.hpp
RMC/src/cppad/runge_45.hpp
RMC/src/cppad/lu_solve.hpp
RMC/src/cppad/pow_int.hpp
RMC/src/cppad/cppad.hpp
RMC/src/cppad/lu_factor.hpp
RMC/src/cppad/RombergMul.h
RMC/src/cppad/stamp-h1
RMC/src/cppad/ode_err_control.hpp
RMC/src/cppad/TrackNewDel.h
RMC/src/cppad/lu_invert.hpp
RMC/src/cppad/NearEqual.h
RMC/src/cppad/romberg_mul.hpp
RMC/src/cppad/OdeGearControl.h
RMC/src/cppad/track_new_del.hpp
RMC/src/cppad/OdeErrControl.h
RMC/src/cppad/CheckSimpleVector.h
RMC/src/cppad/OdeGear.h
RMC/src/cppad/config.h.in
RMC/src/cppad/ErrorHandler.h
RMC/src/cppad/PowInt.h
RMC/src/cppad/ode_gear.hpp
RMC/src/cppad/Rosen34.h
RMC/src/cppad/Runge45.h
RMC/src/cppad/poly.hpp
RMC/src/cppad/speed_test.hpp
RMC/src/cppad/check_simple_vector.hpp
RMC/src/cppad/Poly.h
RMC/src/cppad/CppAD_vector.h
RMC/src/cppad/LuInvert.h
RMC/src/cppad/SpeedTest.h
RMC/src/cppad/LuSolve.h
RMC/src/cppad/CppAD.h
RMC/src/cppad/check_numeric_type.hpp
RMC/src/cppad/error_handler.hpp
RMC/src/cppad/RombergOne.h
RMC/src/condPred.cpp
RMC/src/ap.cpp
RMC/src/predict.cpp
RMC/src/RMC.cpp
RMC/src/ap.h
RMC/src/Makevars
RMC/src/MVfillCpp.cpp
RMC/src/lbfgs.cpp
RMC/src/diagnostics.cpp
RMC/src/lbfgs.h
RMC/DESCRIPTION
RMC/NAMESPACE