RRate: Estimating Replication Rate for Genome-Wide Association Studies
Version 1.0

Replication Rate (RR) is the probability of replicating a statistically significant association in genome-wide association studies. This R-package provide the estimation method for replication rate which makes use of the summary statistics from the primary study. We can use the estimated RR to determine the sample size of the replication study, and to check the consistency between the results of the primary study and those of the replication study.

AuthorWei Jiang, Jing-Hao Xue and Weichuan Yu
Date of publication2016-08-17 10:40:27
MaintainerWei Jiang <wjiangaa@connect.ust.hk>
LicenseGPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("RRate")

Getting started

Package overview

Popular man pages

HLtest: Hosmer-Lemeshow test
repSampleSizeRR: Sample size determination for the replication study based on...
RRate-functions: Estimating Replication Rate for primary associations
RRate-package: Estimating Replication Rate for Genome-Wide Association...
SEest: Estimating standard error of the observed log-odds ratio
smryStats: Example summary statistics
See all...

All man pages Function index File listing

Man pages

HLtest: Hosmer-Lemeshow test
repSampleSizeRR: Sample size determination for the replication study based on...
RRate-functions: Estimating Replication Rate for primary associations
RRate-package: Estimating Replication Rate for Genome-Wide Association...
SEest: Estimating standard error of the observed log-odds ratio
smryStats: Example summary statistics

Functions

Files

NAMESPACE
data
data/param.rda
data/smryStats1.rda
data/smryStats2.rda
R
R/HLtest.R
R/RRate.R
MD5
build
build/partial.rdb
DESCRIPTION
man
man/RRate-package.Rd
man/smryStats.Rd
man/SEest.Rd
man/RRate-functions.Rd
man/repSampleSizeRR.Rd
man/HLtest.Rd
RRate documentation built on May 19, 2017, 8:02 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.