RSNPset: Efficient Score Statistics for Genome-Wide SNP Set Analysis
Version 0.5.2

An implementation of the use of efficient score statistics in genome-wide SNP set analysis with complex traits. Three standard score statistics (Cox, binomial, and Gaussian) are provided, but the package is easily extensible to include others. Code implementing the inferential procedure is primarily written in C++ and utilizes parallelization of the analysis to reduce runtime. A supporting function offers simple computation of observed, permutation, and FWER and FDR adjusted p-values.

Package details

AuthorChanhee Yi, Alexander Sibley, and Kouros Owzar
Date of publication2017-02-21 16:46:20
MaintainerAlexander Sibley <alexander.sibley@dm.duke.edu>
LicenseGPL-3
Version0.5.2
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("RSNPset")

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RSNPset documentation built on May 30, 2017, 2 a.m.