RSNPset: Efficient Score Statistics for Genome-Wide SNP Set Analysis
Version 0.5.2

An implementation of the use of efficient score statistics in genome-wide SNP set analysis with complex traits. Three standard score statistics (Cox, binomial, and Gaussian) are provided, but the package is easily extensible to include others. Code implementing the inferential procedure is primarily written in C++ and utilizes parallelization of the analysis to reduce runtime. A supporting function offers simple computation of observed, permutation, and FWER and FDR adjusted p-values.

AuthorChanhee Yi, Alexander Sibley, and Kouros Owzar
Date of publication2017-02-21 16:46:20
MaintainerAlexander Sibley <alexander.sibley@dm.duke.edu>
LicenseGPL-3
Version0.5.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("RSNPset")

Getting started

Package overview

Popular man pages

rsnpset: RSNPset Analysis Function
RSNPset-package: Efficient Score Statistics for Genome-Wide SNP Set Analysis
rsnpset.pvalue: RSNPset P-value Function
summary.RSNPset: RSNPset Analysis Summary Function
summary.RSNPset.pvalue: RSNPset P-value Summary Function
See all...

All man pages Function index File listing

Man pages

rsnpset: RSNPset Analysis Function
RSNPset-package: Efficient Score Statistics for Genome-Wide SNP Set Analysis
rsnpset.pvalue: RSNPset P-value Function
summary.RSNPset: RSNPset Analysis Summary Function
summary.RSNPset.pvalue: RSNPset P-value Summary Function

Functions

RSNPset Man page
RSNPset-package Man page
rsnpset Man page Source code
rsnpset.pvalue Man page Source code
summary.RSNPset Man page Source code
summary.RSNPset.pvalue Man page Source code

Files

inst
inst/doc
inst/doc/RSNPset.pdf
inst/doc/RSNPset.R
inst/doc/RSNPset.Rnw
src
src/Makevars
src/rsnpset.cpp
src/Makevars.win
src/init.c
NAMESPACE
NEWS
R
R/summary.RSNPset.R
R/summary.RSNPset.pvalue.R
R/rsnpset.R
R/rsnpset.pvalue.R
vignettes
vignettes/RSNPset.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/summary.RSNPset.Rd
man/RSNPset-package.Rd
man/summary.RSNPset.pvalue.Rd
man/rsnpset.pvalue.Rd
man/rsnpset.Rd
RSNPset documentation built on May 20, 2017, midnight

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