findCurrencyMetabolites: Find currency metabolites
In RSeed: Borenstein Analysis
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Find currency metabolites in a metabolic network by the number of reactions using a metabolite.
Usage
1
findCurrencyMetabolites(object, ...)
Arguments
object
object 'modelorg' object
...
cutoff lower cutoff (default 20).
Details
Identification is performed as follows: From the binary S-matrix is calculated in how many reactions a metabolite participates. If it participates in more than 'cutoff' reactions, it is returned as currency metabolited.
Value
character vector with the metabolite IDs of the currency metabolites.
Author(s)
Claus Jonathan Fritzemeier
<clausjonathan.fritzemeier@uni-duesseldorf.de>
References
Master Thesis
by Claus Jonathan Fritzemeier
at Heinrich-Heine-Universitaet Duesseldorf,
Department of Bioinformatics
in 2012
Borenstein et. al. 2008
See Also
Examples
1
2
3
4
data(Ec_core)
findCurrencyMetabolites(Ec_core) # cutoff=20
findCurrencyMetabolites(Ec_core, 10)
RSeed documentation built on May 2, 2019, 2:38 a.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Find currency metabolites in a metabolic network by the number of reactions using a metabolite.
Usage
1 | findCurrencyMetabolites(object, ...)
|
Arguments
object |
|
... |
|
Details
Identification is performed as follows: From the binary S-matrix is calculated in how many reactions a metabolite participates. If it participates in more than 'cutoff' reactions, it is returned as currency metabolited.
Value
character vector with the metabolite IDs of the currency metabolites.
Author(s)
Claus Jonathan Fritzemeier
<clausjonathan.fritzemeier@uni-duesseldorf.de>
References
Master Thesis
by Claus Jonathan Fritzemeier
at Heinrich-Heine-Universitaet Duesseldorf,
Department of Bioinformatics
in 2012
Borenstein et. al. 2008
See Also
Examples
1 2 3 4 | data(Ec_core)
findCurrencyMetabolites(Ec_core) # cutoff=20
findCurrencyMetabolites(Ec_core, 10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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