group_information: Genomic data linked to saline lagoons.
In RTCC: Detecting Trait Clustering in Environmental Gradients
Description
Usage
Format
Source
Description
A dataset containing genomic data of 544 genomes that matched 16s rRNA data from saline lagoons of the Monegros desert area.
Usage
1
Format
A data frame with 544 rows and 14 variables:
- genome
Genome IMG code
- Genome_Size
Genome size
- GC_perc
GC percentage
- Coding_base_perc
Conding base percentage
- CDS_perc
CDS percentage
- RNA_perc
RNA percentage
- rRNA_count
rRNA count
- Transporter_perc
Transporter proteins percentage
- Signal_peptide_perc
Signal peptide percentage
- Transmembrane_perc
Transmembrane proteins percentage
- Gene_Count
Gene count
- min_env
Minimum environmental value where the organism has been observed
- max_env
Minimum environmental value where the organism has been observed
- rel_abundance
Relative abundance of the organism on the metacommunity
...
Source
Triadó-Margarit, X., Capitán, J.A., Menéndez-Serra, M. et al. A Randomized Trait Community Clustering approach to unveil consistent environmental thresholds in community assembly. ISME J 13, 2681–2689 (2019).
RTCC documentation built on July 1, 2020, 7:06 p.m.
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Description Usage Format Source
Description
A dataset containing genomic data of 544 genomes that matched 16s rRNA data from saline lagoons of the Monegros desert area.
Usage
1 |
Format
A data frame with 544 rows and 14 variables:
- genome
Genome IMG code
- Genome_Size
Genome size
- GC_perc
GC percentage
- Coding_base_perc
Conding base percentage
- CDS_perc
CDS percentage
- RNA_perc
RNA percentage
- rRNA_count
rRNA count
- Transporter_perc
Transporter proteins percentage
- Signal_peptide_perc
Signal peptide percentage
- Transmembrane_perc
Transmembrane proteins percentage
- Gene_Count
Gene count
- min_env
Minimum environmental value where the organism has been observed
- max_env
Minimum environmental value where the organism has been observed
- rel_abundance
Relative abundance of the organism on the metacommunity
...
Source
Triadó-Margarit, X., Capitán, J.A., Menéndez-Serra, M. et al. A Randomized Trait Community Clustering approach to unveil consistent environmental thresholds in community assembly. ISME J 13, 2681–2689 (2019).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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