RVFam: Rare Variants Association Analyses with Family Data

The RVFam package provides functions to perform single SNP association analyses and gene-based tests for continuous, binary and survival traits against sequencing data (e.g. exome chip) using family data.

Author
Ming-Huei Chen <mhchen@bu.edu> and Qiong Yang <qyang@bu.edu>
Date of publication
2015-03-10 19:41:17
Maintainer
Ming-Huei Chen <mhchen@bu.edu>
License
GPL (>= 2)
Version
1.1

View on CRAN

Man pages

coxph.EC
function for testing a single/pooled variant for survival...
coxph.ped
function of single SNP analysis and gene-based tests for...
gc.fun
function that does genomic control correction to single SNP...
glmm.binped
function of single SNP analysis and gene-based tests for...
glmm.EC
function for testing a single/pooled variant for continuous...
lme.EC
function for testing a single/pooled variant for continuous...
lme.ped
function of single SNP analysis and gene-based tests for...
rsnpsingene.cor
SNP correlation matrix RData
RVFam-package
Rare Variants Association Analyses with Family Data
snpinfo
SNP information RData

Files in this package

RVFam
RVFam/COPYING
RVFam/inst
RVFam/inst/extdata
RVFam/inst/extdata/chr21geno.csv.gz
RVFam/inst/extdata/ped.csv.gz
RVFam/inst/extdata/MAFchr21.csv.gz
RVFam/inst/extdata/phenotype.csv.gz
RVFam/inst/doc
RVFam/inst/doc/UsingRVFam.docx
RVFam/NAMESPACE
RVFam/data
RVFam/data/chr21.SNPs.in.gene.Cor.RData
RVFam/data/chr21snpinfo.RData
RVFam/R
RVFam/R/coxph.EC.R
RVFam/R/glmm.binped.R
RVFam/R/lme.EC.R
RVFam/R/lme.ped.R
RVFam/R/coxph.ped.R
RVFam/R/gc.fun.R
RVFam/R/glmm.EC.R
RVFam/MD5
RVFam/DESCRIPTION
RVFam/man
RVFam/man/lme.ped.Rd
RVFam/man/coxph.ped.Rd
RVFam/man/RVFam-package.Rd
RVFam/man/snpinfo.Rd
RVFam/man/glmm.EC.Rd
RVFam/man/glmm.binped.Rd
RVFam/man/lme.EC.Rd
RVFam/man/rsnpsingene.cor.Rd
RVFam/man/gc.fun.Rd
RVFam/man/coxph.EC.Rd