geneLists: Ordered Gene Lists from 5 microarray studies

Description Usage Format Source Examples

Description

This dataset contains five lists of genes, each of size 25, from five independent microarray studies on prostate cancer. The lists are given in Table 4 in the manuscript by DeConde et al. Lists form the rows of the dataset with columns corresponding to the ranks of genes in each individual study.

Usage

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Format

A matrix of size 5 by 25 containing 5 lists of genes.

Source

R. DeConde, S. Hawley, S. Falcon, N. Clegg, B. Knudsen, and R. Etzioni. Combining results of microarray experiments: a rank aggregation approach. Stat Appl Genet Mol Biol, 5(1):Article15, 2006.

Examples

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data(geneLists)
topList <- RankAggreg(geneLists, 5, N=700, seed=100, convIn=3)
plot(topList)

RankAggreg documentation built on May 2, 2019, 5:48 a.m.