windows: Window Functions
In RcmdrPlugin.BiclustGUI: 'Rcmdr' Plug-in GUI for Biclustering

Window Functions

R Documentation

Window Functions

Description

List of window functions, responsible for creating all the dialogs.

Usage

bicare_WINDOW()
bicarebiclust_WINDOW(methodname)
bcdiag_WINDOW(methodname)
bcdiagwrite_WINDOW(methodname,fabia.thresZ,fabia.thresL)
biclustbimax_WIN()
biclustCC_WIN()
biclustextraplots_WINDOW(methodname)
biclustplaid_WIN()
biclustquest_WIN()
biclustspectral_WIN()
biclustXMotif_WIN()
clearresults_WINDOW()
exportFURBY_WINDOW()
exportTXT_WINDOW()
extractbicluster_WINDOW()
fabiabiclust_WINDOW(methodname,thresZ,thresL)
fabialaplace_WIN()
fabiapostprojection_WIN()
fabiasparsenessprojection_WIN()
fabiaSPARSE_WIN()
findbiclusters_WINDOW()
iBBiG_WIN()
image_WINDOW()
isadefault_WIN()
isaextraplots_WINDOW(methodname)
jaccard_WINDOW()
plotgridpref_WINDOW()
rqubic_WINDOW()
saveload_WINDOW()
s4vd_WIN()
search_WINDOW()
ssvd_WIN()
superbiclust_WINDOW(methodname,methodseed,methodsave)
MaxBC_WINDOW()
bibit_WIN()
bibit3_WIN()
bibitworkflow_WIN(methodname)
heatmapJI_WINDOW()

Arguments

`methodname`	These windows are called from a specific biclustering method window. The argument is a string containing the name of the method it is called from.
`methodseed`	Logical Value of `methodseed` option for the method chosen in `methodname`. Superbiclust window needs this information to generate the window correctly (e.g. the repeat analysis box)
`methodsave`	Logical Value of `methodsave` option for the method chosen in `methodname`. Superbiclust window needs this information to apply the repeat analysis correctly
`thresZ`	Fabia bicluster samples threshold
`thresL`	Fabia bicluster loadings threshold
`fabia.thresZ`	See `thresZ`
`fabia.thresL`	See `thresL`

Details

All these window functions for all the biclustering dialogs were created using the template scripts (newmethod_script.R & newtool_script.R). A detailed description with an example on how to use these scripts and how to create the dialogs, can be found in the appendix (Guideline to New Implementations).

Please note that these template scripts are also located in the doc subdirectory of the package.