Files in RcppShark
R Interface to the Shark Machine Learning Library
TODO
inst
inst/doc
inst/doc/RcppShark.Rmd
inst/doc/RcppShark.html
inst/skeleton
inst/skeleton/Makevars
inst/skeleton/utils.h
inst/skeleton/utils.cpp
inst/skeleton/KMeansTutorial.cpp
inst/skeleton/Makevars.win
inst/include
inst/include/shark
inst/include/shark/Algorithms
inst/include/shark/Algorithms/AbstractMultiObjectiveOptimizer.h
inst/include/shark/Algorithms/JaakkolaHeuristic.h
inst/include/shark/Algorithms/Pegasos.h
inst/include/shark/Algorithms/QP
inst/include/shark/Algorithms/QP/QpMcBoxDecomp.h
inst/include/shark/Algorithms/QP/QpSparseArray.h
inst/include/shark/Algorithms/QP/QuadraticProgram.h
inst/include/shark/Algorithms/QP/QpBoxLinear.h
inst/include/shark/Algorithms/QP/QpMcLinear.h
inst/include/shark/Algorithms/QP/Impl
inst/include/shark/Algorithms/QP/Impl/AnalyticProblems.h
inst/include/shark/Algorithms/QP/SvmProblems.h
inst/include/shark/Algorithms/QP/BoxConstrainedProblems.h
inst/include/shark/Algorithms/QP/QpSolver.h
inst/include/shark/Algorithms/QP/QpMcSimplexDecomp.h
inst/include/shark/Algorithms/StoppingCriteria
inst/include/shark/Algorithms/StoppingCriteria/TrainingError.h
inst/include/shark/Algorithms/StoppingCriteria/MaxIterations.h
inst/include/shark/Algorithms/StoppingCriteria/AbstractStoppingCriterion.h
inst/include/shark/Algorithms/StoppingCriteria/GeneralizationLoss.h
inst/include/shark/Algorithms/StoppingCriteria/GeneralizationQuotient.h
inst/include/shark/Algorithms/StoppingCriteria/TrainingProgress.h
inst/include/shark/Algorithms/StoppingCriteria/ValidatedStoppingCriterion.h
inst/include/shark/Algorithms/Trainers
inst/include/shark/Algorithms/Trainers/AbstractSvmTrainer.h
inst/include/shark/Algorithms/Trainers/CARTcommon.h
inst/include/shark/Algorithms/Trainers/RFTrainer.h
inst/include/shark/Algorithms/Trainers/Perceptron.h
inst/include/shark/Algorithms/Trainers/NormalizeComponentsUnitVariance.h
inst/include/shark/Algorithms/Trainers/RankingSvmTrainer.h
inst/include/shark/Algorithms/Trainers/MissingFeatureSvmTrainer.h
inst/include/shark/Algorithms/Trainers/AbstractWeightedTrainer.h
inst/include/shark/Algorithms/Trainers/LassoRegression.h
inst/include/shark/Algorithms/Trainers/NormalizeComponentsZCA.h
inst/include/shark/Algorithms/Trainers/LinearRegression.h
inst/include/shark/Algorithms/Trainers/OneClassSvmTrainer.h
inst/include/shark/Algorithms/Trainers/PCA.h
inst/include/shark/Algorithms/Trainers/SigmoidFit.h
inst/include/shark/Algorithms/Trainers/OptimizationTrainer.h
inst/include/shark/Algorithms/Trainers/CARTTrainer.h
inst/include/shark/Algorithms/Trainers/NormalizeKernelUnitVariance.h
inst/include/shark/Algorithms/Trainers/NormalizeComponentsUnitInterval.h
inst/include/shark/Algorithms/Trainers/CSvmTrainer.h
inst/include/shark/Algorithms/Trainers/KernelMeanClassifier.h
inst/include/shark/Algorithms/Trainers/LDA.h
inst/include/shark/Algorithms/Trainers/KernelSGDTrainer.h
inst/include/shark/Algorithms/Trainers/AbstractTrainer.h
inst/include/shark/Algorithms/Trainers/NBClassifierTrainer.h
inst/include/shark/Algorithms/Trainers/RegularizationNetworkTrainer.h
inst/include/shark/Algorithms/Trainers/LinearSAGTrainer.h
inst/include/shark/Algorithms/Trainers/FisherLDA.h
inst/include/shark/Algorithms/Trainers/Distribution
inst/include/shark/Algorithms/Trainers/Distribution/NormalTrainer.h
inst/include/shark/Algorithms/Trainers/Distribution/DistTrainerContainer.h
inst/include/shark/Algorithms/Trainers/Distribution/GenericDistTrainer.h
inst/include/shark/Algorithms/Trainers/NormalizeComponentsWhitening.h
inst/include/shark/Algorithms/Trainers/EpsilonSvmTrainer.h
inst/include/shark/Algorithms/Trainers/Budgeted
inst/include/shark/Algorithms/Trainers/Budgeted/KernelBudgetedSGDTrainer.h
inst/include/shark/Algorithms/Trainers/Budgeted/AbstractBudgetMaintenanceStrategy.h
inst/include/shark/Algorithms/Trainers/Budgeted/ProjectBudgetMaintenanceStrategy.h
inst/include/shark/Algorithms/Trainers/Budgeted/MergeBudgetMaintenanceStrategy.h
inst/include/shark/Algorithms/Trainers/Budgeted/RemoveBudgetMaintenanceStrategy.h
inst/include/shark/Algorithms/NearestNeighbors
inst/include/shark/Algorithms/NearestNeighbors/TreeNearestNeighbors.h
inst/include/shark/Algorithms/NearestNeighbors/AbstractNearestNeighbors.h
inst/include/shark/Algorithms/NearestNeighbors/SimpleNearestNeighbors.h
inst/include/shark/Algorithms/DirectSearch
inst/include/shark/Algorithms/DirectSearch/Individual.h
inst/include/shark/Algorithms/DirectSearch/VDCMA.h
inst/include/shark/Algorithms/DirectSearch/GridSearch.h
inst/include/shark/Algorithms/DirectSearch/Operators
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HVContribution2D.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HVCalculatorMDWFG.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeCalculator3D.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeCalculator2D.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HVSubsetSelection2D.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeCalculator.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HVContribution3D.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HVContributionMD.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeApproximator.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HVCalculatorMDHOY.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeContribution.h
inst/include/shark/Algorithms/DirectSearch/Operators/Hypervolume/HVContrApproximator.h
inst/include/shark/Algorithms/DirectSearch/Operators/Domination
inst/include/shark/Algorithms/DirectSearch/Operators/Domination/DCNonDominatedSort.h
inst/include/shark/Algorithms/DirectSearch/Operators/Domination/ParetoDominance.h
inst/include/shark/Algorithms/DirectSearch/Operators/Domination/FastNonDominatedSort.h
inst/include/shark/Algorithms/DirectSearch/Operators/Domination/NonDominatedSort.h
inst/include/shark/Algorithms/DirectSearch/Operators/TwoPointStepSizeAdaptation.h
inst/include/shark/Algorithms/DirectSearch/Operators/PopulationBasedStepSizeAdaptation.h
inst/include/shark/Algorithms/DirectSearch/Operators/Evaluation
inst/include/shark/Algorithms/DirectSearch/Operators/Evaluation/PenalizingEvaluator.h
inst/include/shark/Algorithms/DirectSearch/Operators/Indicators
inst/include/shark/Algorithms/DirectSearch/Operators/Indicators/AdditiveEpsilonIndicator.h
inst/include/shark/Algorithms/DirectSearch/Operators/Indicators/HypervolumeIndicator.h
inst/include/shark/Algorithms/DirectSearch/Operators/Mutation
inst/include/shark/Algorithms/DirectSearch/Operators/Mutation/PolynomialMutation.h
inst/include/shark/Algorithms/DirectSearch/Operators/Mutation/BitflipMutator.h
inst/include/shark/Algorithms/DirectSearch/Operators/Selection
inst/include/shark/Algorithms/DirectSearch/Operators/Selection/RouletteWheelSelection.h
inst/include/shark/Algorithms/DirectSearch/Operators/Selection/LinearRanking.h
inst/include/shark/Algorithms/DirectSearch/Operators/Selection/UniformRanking.h
inst/include/shark/Algorithms/DirectSearch/Operators/Selection/EPTournamentSelection.h
inst/include/shark/Algorithms/DirectSearch/Operators/Selection/ElitistSelection.h
inst/include/shark/Algorithms/DirectSearch/Operators/Selection/TournamentSelection.h
inst/include/shark/Algorithms/DirectSearch/Operators/Selection/IndicatorBasedSelection.h
inst/include/shark/Algorithms/DirectSearch/Operators/Recombination
inst/include/shark/Algorithms/DirectSearch/Operators/Recombination/OnePointCrossover.h
inst/include/shark/Algorithms/DirectSearch/Operators/Recombination/BinaryCrossover.h
inst/include/shark/Algorithms/DirectSearch/Operators/Recombination/PMXCrossover.h
inst/include/shark/Algorithms/DirectSearch/Operators/Recombination/UniformCrossover.h
inst/include/shark/Algorithms/DirectSearch/SimplexDownhill.h
inst/include/shark/Algorithms/DirectSearch/CMA.h
inst/include/shark/Algorithms/DirectSearch/LMCMA.h
inst/include/shark/Algorithms/DirectSearch/ElitistCMA.h
inst/include/shark/Algorithms/DirectSearch/Grid.h
inst/include/shark/Algorithms/DirectSearch/SteadyStateMOCMA.h
inst/include/shark/Algorithms/DirectSearch/CMSA.h
inst/include/shark/Algorithms/DirectSearch/MOCMA.h
inst/include/shark/Algorithms/DirectSearch/CrossEntropyMethod.h
inst/include/shark/Algorithms/DirectSearch/RealCodedNSGAII.h
inst/include/shark/Algorithms/DirectSearch/CMA
inst/include/shark/Algorithms/DirectSearch/CMA/CMAIndividual.h
inst/include/shark/Algorithms/DirectSearch/CMA/Chromosome.h
inst/include/shark/Algorithms/DirectSearch/SMS-EMOA.h
inst/include/shark/Algorithms/KMeans.h
inst/include/shark/Algorithms/GradientDescent
inst/include/shark/Algorithms/GradientDescent/LBFGS.h
inst/include/shark/Algorithms/GradientDescent/BFGS.h
inst/include/shark/Algorithms/GradientDescent/LineSearch.h
inst/include/shark/Algorithms/GradientDescent/AbstractLineSearchOptimizer.h
inst/include/shark/Algorithms/GradientDescent/SteepestDescent.h
inst/include/shark/Algorithms/GradientDescent/Impl
inst/include/shark/Algorithms/GradientDescent/Impl/wolfecubic.inl
inst/include/shark/Algorithms/GradientDescent/Impl/dlinmin.inl
inst/include/shark/Algorithms/GradientDescent/TrustRegionNewton.h
inst/include/shark/Algorithms/GradientDescent/CG.h
inst/include/shark/Algorithms/GradientDescent/Rprop.h
inst/include/shark/Algorithms/AbstractOptimizer.h
inst/include/shark/Algorithms/AbstractSingleObjectiveOptimizer.h
inst/include/shark/LinAlg
inst/include/shark/LinAlg/BlockMatrix2x2.h
inst/include/shark/LinAlg/Initialize.h
inst/include/shark/LinAlg/LRUCache.h
inst/include/shark/LinAlg/GaussianKernelMatrix.h
inst/include/shark/LinAlg/RegularizedKernelMatrix.h
inst/include/shark/LinAlg/Metrics.h
inst/include/shark/LinAlg/CachedMatrix.h
inst/include/shark/LinAlg/BLAS
inst/include/shark/LinAlg/BLAS/matrix_expression.hpp
inst/include/shark/LinAlg/BLAS/decompositions.hpp
inst/include/shark/LinAlg/BLAS/matrix_sparse.hpp
inst/include/shark/LinAlg/BLAS/expression_types.hpp
inst/include/shark/LinAlg/BLAS/solve.hpp
inst/include/shark/LinAlg/BLAS/remora.hpp
inst/include/shark/LinAlg/BLAS/matrix.hpp
inst/include/shark/LinAlg/BLAS/matrix_proxy.hpp
inst/include/shark/LinAlg/BLAS/vector_proxy.hpp
inst/include/shark/LinAlg/BLAS/io.hpp
inst/include/shark/LinAlg/BLAS/permutation.hpp
inst/include/shark/LinAlg/BLAS/vector_sparse.hpp
inst/include/shark/LinAlg/BLAS/detail
inst/include/shark/LinAlg/BLAS/detail/evaluation_tags.hpp
inst/include/shark/LinAlg/BLAS/detail/expression_optimizers.hpp
inst/include/shark/LinAlg/BLAS/detail/storage.hpp
inst/include/shark/LinAlg/BLAS/detail/functional.hpp
inst/include/shark/LinAlg/BLAS/detail/vector_expression_classes.hpp
inst/include/shark/LinAlg/BLAS/detail/matrix_expression_classes.hpp
inst/include/shark/LinAlg/BLAS/detail/traits.hpp
inst/include/shark/LinAlg/BLAS/detail/vector_proxy_classes.hpp
inst/include/shark/LinAlg/BLAS/detail/structure.hpp
inst/include/shark/LinAlg/BLAS/detail/iterator.hpp
inst/include/shark/LinAlg/BLAS/detail/check.hpp
inst/include/shark/LinAlg/BLAS/detail/matrix_proxy_classes.hpp
inst/include/shark/LinAlg/BLAS/kernels
inst/include/shark/LinAlg/BLAS/kernels/sum_rows.hpp
inst/include/shark/LinAlg/BLAS/kernels/conv2d.hpp
inst/include/shark/LinAlg/BLAS/kernels/vector_fold.hpp
inst/include/shark/LinAlg/BLAS/kernels/potrf.hpp
inst/include/shark/LinAlg/BLAS/kernels/vector_assign.hpp
inst/include/shark/LinAlg/BLAS/kernels/atlas
inst/include/shark/LinAlg/BLAS/kernels/atlas/potrf.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas
inst/include/shark/LinAlg/BLAS/kernels/cblas/trsv.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas/trsm.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas/syrk.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas/trmm.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas/tpmv.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas/dense_gemm.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas/trmv.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas/cblas_inc.hpp
inst/include/shark/LinAlg/BLAS/kernels/cblas/gemv.hpp
inst/include/shark/LinAlg/BLAS/kernels/pstrf.hpp
inst/include/shark/LinAlg/BLAS/kernels/trsv.hpp
inst/include/shark/LinAlg/BLAS/kernels/trsm.hpp
inst/include/shark/LinAlg/BLAS/kernels/syev.hpp
inst/include/shark/LinAlg/BLAS/kernels/syrk.hpp
inst/include/shark/LinAlg/BLAS/kernels/vector_max.hpp
inst/include/shark/LinAlg/BLAS/kernels/getrf.hpp
inst/include/shark/LinAlg/BLAS/kernels/trmm.hpp
inst/include/shark/LinAlg/BLAS/kernels/matrix_fold.hpp
inst/include/shark/LinAlg/BLAS/kernels/matrix_assign.hpp
inst/include/shark/LinAlg/BLAS/kernels/tpmv.hpp
inst/include/shark/LinAlg/BLAS/kernels/default
inst/include/shark/LinAlg/BLAS/kernels/default/sum_rows.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/conv2d.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/vector_fold.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/potrf.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/vector_assign.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/pstrf.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/trsv.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/trsm.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/syev.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/syrk.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/vector_max.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/getrf.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/trmm.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/mgemm.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/aligned_allocator.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/aligned_alloc.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned_intel.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned_gcc.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned_clang.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/is_alignment_c.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_sunos.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_macos.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/is_alignment.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/max_objects.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_posix.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_msvc.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/max_size.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_a.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned_msvc.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/boost_align/assume_aligned.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/simple_proxies.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/matrix_fold.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/simd.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/matrix_assign.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/tpmv.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/dense_gemm.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/dot.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/trmv.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/gemm.hpp
inst/include/shark/LinAlg/BLAS/kernels/default/gemv.hpp
inst/include/shark/LinAlg/BLAS/kernels/dot.hpp
inst/include/shark/LinAlg/BLAS/kernels/lapack
inst/include/shark/LinAlg/BLAS/kernels/lapack/fortran.hpp
inst/include/shark/LinAlg/BLAS/kernels/lapack/syev.hpp
inst/include/shark/LinAlg/BLAS/kernels/trmv.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu
inst/include/shark/LinAlg/BLAS/kernels/gpu/sum_rows.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/vector_fold.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/vector_assign.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/trsv.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/trsm.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/syrk.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/vector_max.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/trmm.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/matrix_fold.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/matrix_assign.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/dot.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/trmv.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/gemm.hpp
inst/include/shark/LinAlg/BLAS/kernels/gpu/gemv.hpp
inst/include/shark/LinAlg/BLAS/kernels/gemm.hpp
inst/include/shark/LinAlg/BLAS/kernels/gemv.hpp
inst/include/shark/LinAlg/BLAS/vector.hpp
inst/include/shark/LinAlg/BLAS/gpu
inst/include/shark/LinAlg/BLAS/gpu/traits.hpp
inst/include/shark/LinAlg/BLAS/gpu/matrix.hpp
inst/include/shark/LinAlg/BLAS/gpu/vector.hpp
inst/include/shark/LinAlg/BLAS/gpu/copy.hpp
inst/include/shark/LinAlg/BLAS/assignment.hpp
inst/include/shark/LinAlg/BLAS/vector_expression.hpp
inst/include/shark/LinAlg/BLAS/triangular_matrix.hpp
inst/include/shark/LinAlg/eigenvalues.h
inst/include/shark/LinAlg/Base.h
inst/include/shark/LinAlg/KernelMatrix.h
inst/include/shark/LinAlg/ModifiedKernelMatrix.h
inst/include/shark/LinAlg/PrecomputedMatrix.h
inst/include/shark/LinAlg/Impl
inst/include/shark/LinAlg/Impl/Initialize.h
inst/include/shark/LinAlg/PartlyPrecomputedMatrix.h
inst/include/shark/LinAlg/ExampleModifiedKernelMatrix.h
inst/include/shark/LinAlg/DifferenceKernelMatrix.h
inst/include/shark/LinAlg/rotations.h
inst/include/shark/LinAlg/Tools.h
inst/include/shark/Core
inst/include/shark/Core/DLLSupport.h
inst/include/shark/Core/Shark.h
inst/include/shark/Core/utility
inst/include/shark/Core/utility/Range.h
inst/include/shark/Core/utility/ScopedHandle.h
inst/include/shark/Core/utility/Iterators.h
inst/include/shark/Core/utility/Impl
inst/include/shark/Core/utility/Impl/boost_iterator_facade_fixed.hpp
inst/include/shark/Core/utility/functional.h
inst/include/shark/Core/utility/KeyValuePair.h
inst/include/shark/Core/utility/ZipPair.h
inst/include/shark/Core/utility/CanBeCalled.h
inst/include/shark/Core/Math.h
inst/include/shark/Core/OpenMP.h
inst/include/shark/Core/Exception.h
inst/include/shark/Core/Traits
inst/include/shark/Core/Traits/ProxyReferenceTraits.h
inst/include/shark/Core/Timer.h
inst/include/shark/Core/Flags.h
inst/include/shark/Core/State.h
inst/include/shark/Core/ResultSets.h
inst/include/shark/Core/IParameterizable.h
inst/include/shark/Core/INameable.h
inst/include/shark/Unsupervised
inst/include/shark/Unsupervised/RBM
inst/include/shark/Unsupervised/RBM/Neuronlayers
inst/include/shark/Unsupervised/RBM/Neuronlayers/BipolarLayer.h
inst/include/shark/Unsupervised/RBM/Neuronlayers/BinaryLayer.h
inst/include/shark/Unsupervised/RBM/Neuronlayers/GaussianLayer.h
inst/include/shark/Unsupervised/RBM/Neuronlayers/TruncatedExponentialLayer.h
inst/include/shark/Unsupervised/RBM/Problems
inst/include/shark/Unsupervised/RBM/Problems/Shifter.h
inst/include/shark/Unsupervised/RBM/Problems/MNIST.h
inst/include/shark/Unsupervised/RBM/Problems/DistantModes.h
inst/include/shark/Unsupervised/RBM/Problems/BarsAndStripes.h
inst/include/shark/Unsupervised/RBM/RBM.h
inst/include/shark/Unsupervised/RBM/ConvolutionalRBM.h
inst/include/shark/Unsupervised/RBM/BipolarRBM.h
inst/include/shark/Unsupervised/RBM/Sampling
inst/include/shark/Unsupervised/RBM/Sampling/EnergyStoringTemperedMarkovChain.h
inst/include/shark/Unsupervised/RBM/Sampling/GibbsOperator.h
inst/include/shark/Unsupervised/RBM/Sampling/TemperedMarkovChain.h
inst/include/shark/Unsupervised/RBM/Sampling/Impl
inst/include/shark/Unsupervised/RBM/Sampling/Impl/SampleTypes.h
inst/include/shark/Unsupervised/RBM/Sampling/MarkovChain.h
inst/include/shark/Unsupervised/RBM/TruncExpBinaryRBM.h
inst/include/shark/Unsupervised/RBM/Tags.h
inst/include/shark/Unsupervised/RBM/GradientApproximations
inst/include/shark/Unsupervised/RBM/GradientApproximations/ContrastiveDivergence.h
inst/include/shark/Unsupervised/RBM/GradientApproximations/SingleChainApproximator.h
inst/include/shark/Unsupervised/RBM/GradientApproximations/Impl
inst/include/shark/Unsupervised/RBM/GradientApproximations/Impl/DataEvaluator.h
inst/include/shark/Unsupervised/RBM/GradientApproximations/ExactGradient.h
inst/include/shark/Unsupervised/RBM/GradientApproximations/MultiChainApproximator.h
inst/include/shark/Unsupervised/RBM/analytics.h
inst/include/shark/Unsupervised/RBM/Impl
inst/include/shark/Unsupervised/RBM/Impl/ConvolutionalEnergyGradient.h
inst/include/shark/Unsupervised/RBM/Impl/analytics.h
inst/include/shark/Unsupervised/RBM/Impl/AverageEnergyGradient.h
inst/include/shark/Unsupervised/RBM/GaussianBinaryRBM.h
inst/include/shark/Unsupervised/RBM/StateSpaces
inst/include/shark/Unsupervised/RBM/StateSpaces/RealSpace.h
inst/include/shark/Unsupervised/RBM/StateSpaces/TwoStateSpace.h
inst/include/shark/Unsupervised/RBM/Energy.h
inst/include/shark/Unsupervised/RBM/ConvolutionalBinaryRBM.h
inst/include/shark/Unsupervised/RBM/BinaryRBM.h
inst/include/shark/ObjectiveFunctions
inst/include/shark/ObjectiveFunctions/EvaluationArchive.h
inst/include/shark/ObjectiveFunctions/SparseAutoencoderError.h
inst/include/shark/ObjectiveFunctions/LooErrorCSvm.h
inst/include/shark/ObjectiveFunctions/NegativeAUC.h
inst/include/shark/ObjectiveFunctions/Benchmarks
inst/include/shark/ObjectiveFunctions/Benchmarks/IHR2.h
inst/include/shark/ObjectiveFunctions/Benchmarks/DTLZ1.h
inst/include/shark/ObjectiveFunctions/Benchmarks/ELLI2.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ4.h
inst/include/shark/ObjectiveFunctions/Benchmarks/CIGTAB1.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ3.h
inst/include/shark/ObjectiveFunctions/Benchmarks/ZDT4.h
inst/include/shark/ObjectiveFunctions/Benchmarks/PoleSimulators
inst/include/shark/ObjectiveFunctions/Benchmarks/PoleSimulators/SinglePole.h
inst/include/shark/ObjectiveFunctions/Benchmarks/PoleSimulators/DoublePole.h
inst/include/shark/ObjectiveFunctions/Benchmarks/MultiObjectiveBenchmark.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ8.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ1.h
inst/include/shark/ObjectiveFunctions/Benchmarks/DTLZ6.h
inst/include/shark/ObjectiveFunctions/Benchmarks/RotatedErrorFunction.h
inst/include/shark/ObjectiveFunctions/Benchmarks/IHR4.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Benchmarks.h
inst/include/shark/ObjectiveFunctions/Benchmarks/MarkovPole.h
inst/include/shark/ObjectiveFunctions/Benchmarks/DTLZ7.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Discus.h
inst/include/shark/ObjectiveFunctions/Benchmarks/DiffPowers.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Himmelblau.h
inst/include/shark/ObjectiveFunctions/Benchmarks/ZDT1.h
inst/include/shark/ObjectiveFunctions/Benchmarks/IHR6.h
inst/include/shark/ObjectiveFunctions/Benchmarks/IHR3.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Ackley.h
inst/include/shark/ObjectiveFunctions/Benchmarks/CigarDiscus.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ5.h
inst/include/shark/ObjectiveFunctions/Benchmarks/ZDT3.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ7.h
inst/include/shark/ObjectiveFunctions/Benchmarks/ConstrainedSphere.h
inst/include/shark/ObjectiveFunctions/Benchmarks/GruauPole.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Sphere.h
inst/include/shark/ObjectiveFunctions/Benchmarks/DTLZ3.h
inst/include/shark/ObjectiveFunctions/Benchmarks/ELLI1.h
inst/include/shark/ObjectiveFunctions/Benchmarks/NonMarkovPole.h
inst/include/shark/ObjectiveFunctions/Benchmarks/GSP.h
inst/include/shark/ObjectiveFunctions/Benchmarks/DTLZ5.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Fonseca.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Rosenbrock.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ6.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ2.h
inst/include/shark/ObjectiveFunctions/Benchmarks/CIGTAB2.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Schwefel.h
inst/include/shark/ObjectiveFunctions/Benchmarks/ZDT2.h
inst/include/shark/ObjectiveFunctions/Benchmarks/LZ9.h
inst/include/shark/ObjectiveFunctions/Benchmarks/DTLZ4.h
inst/include/shark/ObjectiveFunctions/Benchmarks/IHR1.h
inst/include/shark/ObjectiveFunctions/Benchmarks/ZDT6.h
inst/include/shark/ObjectiveFunctions/Benchmarks/DTLZ2.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Ellipsoid.h
inst/include/shark/ObjectiveFunctions/Benchmarks/Cigar.h
inst/include/shark/ObjectiveFunctions/NegativeGaussianProcessEvidence.h
inst/include/shark/ObjectiveFunctions/KernelTargetAlignment.h
inst/include/shark/ObjectiveFunctions/BoxConstraintHandler.h
inst/include/shark/ObjectiveFunctions/Regularizer.h
inst/include/shark/ObjectiveFunctions/NoisyErrorFunction.h
inst/include/shark/ObjectiveFunctions/ErrorFunction.h
inst/include/shark/ObjectiveFunctions/Impl
inst/include/shark/ObjectiveFunctions/Impl/NoisyErrorFunction.inl
inst/include/shark/ObjectiveFunctions/Impl/ErrorFunction.inl
inst/include/shark/ObjectiveFunctions/Impl/FunctionWrapperBase.h
inst/include/shark/ObjectiveFunctions/Impl/SparseAutoencoderError.inl
inst/include/shark/ObjectiveFunctions/Loss
inst/include/shark/ObjectiveFunctions/Loss/AbsoluteLoss.h
inst/include/shark/ObjectiveFunctions/Loss/EpsilonHingeLoss.h
inst/include/shark/ObjectiveFunctions/Loss/AbstractLoss.h
inst/include/shark/ObjectiveFunctions/Loss/SquaredLoss.h
inst/include/shark/ObjectiveFunctions/Loss/TukeyBiweightLoss.h
inst/include/shark/ObjectiveFunctions/Loss/HingeLoss.h
inst/include/shark/ObjectiveFunctions/Loss/SquaredEpsilonHingeLoss.h
inst/include/shark/ObjectiveFunctions/Loss/DiscreteLoss.h
inst/include/shark/ObjectiveFunctions/Loss/ZeroOneLoss.h
inst/include/shark/ObjectiveFunctions/Loss/SquaredHingeLoss.h
inst/include/shark/ObjectiveFunctions/Loss/CrossEntropy.h
inst/include/shark/ObjectiveFunctions/Loss/HuberLoss.h
inst/include/shark/ObjectiveFunctions/AbstractCost.h
inst/include/shark/ObjectiveFunctions/CrossValidationError.h
inst/include/shark/ObjectiveFunctions/AbstractObjectiveFunction.h
inst/include/shark/ObjectiveFunctions/NegativeLogLikelihood.h
inst/include/shark/ObjectiveFunctions/AbstractConstraintHandler.h
inst/include/shark/ObjectiveFunctions/RadiusMarginQuotient.h
inst/include/shark/ObjectiveFunctions/CombinedObjectiveFunction.h
inst/include/shark/ObjectiveFunctions/ROC.h
inst/include/shark/ObjectiveFunctions/KernelBasisDistance.h
inst/include/shark/ObjectiveFunctions/SvmLogisticInterpretation.h
inst/include/shark/ObjectiveFunctions/LooError.h
inst/include/shark/Statistics
inst/include/shark/Statistics/Statistics.h
inst/include/shark/Statistics/Distributions
inst/include/shark/Statistics/Distributions/MultiNomialDistribution.h
inst/include/shark/Statistics/Distributions/MultiVariateNormalDistribution.h
inst/include/shark/Models
inst/include/shark/Models/MeanModel.h
inst/include/shark/Models/RBFLayer.h
inst/include/shark/Models/Softmax.h
inst/include/shark/Models/SoftNearestNeighborClassifier.h
inst/include/shark/Models/CMAC.h
inst/include/shark/Models/Neurons.h
inst/include/shark/Models/Kernels
inst/include/shark/Models/Kernels/DiscreteKernel.h
inst/include/shark/Models/Kernels/GaussianRbfKernel.h
inst/include/shark/Models/Kernels/LinearKernel.h
inst/include/shark/Models/Kernels/KernelHelpers.h
inst/include/shark/Models/Kernels/WeightedSumKernel.h
inst/include/shark/Models/Kernels/SubrangeKernel.h
inst/include/shark/Models/Kernels/MultiTaskKernel.h
inst/include/shark/Models/Kernels/MissingFeaturesKernelExpansion.h
inst/include/shark/Models/Kernels/MklKernel.h
inst/include/shark/Models/Kernels/ScaledKernel.h
inst/include/shark/Models/Kernels/ModelKernel.h
inst/include/shark/Models/Kernels/MonomialKernel.h
inst/include/shark/Models/Kernels/PolynomialKernel.h
inst/include/shark/Models/Kernels/AbstractKernelFunction.h
inst/include/shark/Models/Kernels/Impl
inst/include/shark/Models/Kernels/Impl/MklKernelBase.h
inst/include/shark/Models/Kernels/AbstractMetric.h
inst/include/shark/Models/Kernels/NormalizedKernel.h
inst/include/shark/Models/Kernels/ArdKernel.h
inst/include/shark/Models/Kernels/ProductKernel.h
inst/include/shark/Models/Kernels/CSvmDerivative.h
inst/include/shark/Models/Kernels/KernelExpansion.h
inst/include/shark/Models/Kernels/EvalSkipMissingFeatures.h
inst/include/shark/Models/LinearModel.h
inst/include/shark/Models/ConvexCombination.h
inst/include/shark/Models/NearestNeighborClassifier.h
inst/include/shark/Models/OnlineRNNet.h
inst/include/shark/Models/Converter.h
inst/include/shark/Models/TiedAutoencoder.h
inst/include/shark/Models/Trees
inst/include/shark/Models/Trees/LCTree.h
inst/include/shark/Models/Trees/KHCTree.h
inst/include/shark/Models/Trees/KDTree.h
inst/include/shark/Models/Trees/CARTClassifier.h
inst/include/shark/Models/Trees/General.h
inst/include/shark/Models/Trees/RFClassifier.h
inst/include/shark/Models/Trees/BinaryTree.h
inst/include/shark/Models/GaussianNoiseModel.h
inst/include/shark/Models/LinearClassifier.h
inst/include/shark/Models/LinearNorm.h
inst/include/shark/Models/FFNet.h
inst/include/shark/Models/Clustering
inst/include/shark/Models/Clustering/AbstractClustering.h
inst/include/shark/Models/Clustering/Centroids.h
inst/include/shark/Models/Clustering/ClusteringModel.h
inst/include/shark/Models/Clustering/HierarchicalClustering.h
inst/include/shark/Models/Clustering/HardClusteringModel.h
inst/include/shark/Models/Clustering/SoftClusteringModel.h
inst/include/shark/Models/ConcatenatedModel.h
inst/include/shark/Models/SigmoidModel.h
inst/include/shark/Models/ImpulseNoiseModel.h
inst/include/shark/Models/OneVersusOneClassifier.h
inst/include/shark/Models/NearestNeighborRegression.h
inst/include/shark/Models/AbstractModel.h
inst/include/shark/Models/Normalizer.h
inst/include/shark/Models/NBClassifier.h
inst/include/shark/Models/RecurrentStructure.h
inst/include/shark/Models/RNNet.h
inst/include/shark/Models/Autoencoder.h
inst/include/shark/Data
inst/include/shark/Data/Download.h
inst/include/shark/Data/ExportKernelMatrix.h
inst/include/shark/Data/SparseData.h
inst/include/shark/Data/DataView.h
inst/include/shark/Data/BatchInterfaceAdaptStruct.h
inst/include/shark/Data/Statistics.h
inst/include/shark/Data/Csv.h
inst/include/shark/Data/Libsvm.h
inst/include/shark/Data/Impl
inst/include/shark/Data/Impl/Downloader.hpp
inst/include/shark/Data/Impl/BoostFusionCopy.hpp
inst/include/shark/Data/Impl/BoostFusion151DefineStructInl.hpp
inst/include/shark/Data/Impl/Statistics.inl
inst/include/shark/Data/Impl/CVDatasetTools.inl
inst/include/shark/Data/Impl/Dataset.inl
inst/include/shark/Data/BatchInterface.h
inst/include/shark/Data/LabelOrder.h
inst/include/shark/Data/HDF5.h
inst/include/shark/Data/DataDistribution.h
inst/include/shark/Data/Pgm.h
inst/include/shark/Data/Dataset.h
inst/include/shark/Data/CVDatasetTools.h
inst/include/shark/Data/WeightedDataset.h
inst/include/shark/Rng
inst/include/shark/Rng/Rng.h
inst/include/shark/Rng/DiscreteUniform.h
inst/include/shark/Rng/Cauchy.h
inst/include/shark/Rng/Geometric.h
inst/include/shark/Rng/Uniform.h
inst/include/shark/Rng/LogNormal.h
inst/include/shark/Rng/Runif.h
inst/include/shark/Rng/Bernoulli.h
inst/include/shark/Rng/AbstractDistribution.h
inst/include/shark/Rng/Weibull.h
inst/include/shark/Rng/TruncatedExponential.h
inst/include/shark/Rng/GlobalRng.h
inst/include/shark/Rng/NegExponential.h
inst/include/shark/Rng/Normal.h
inst/include/shark/Rng/Erlang.h
inst/include/shark/Rng/Entropy.h
inst/include/shark/Rng/Binomial.h
inst/include/shark/Rng/KullbackLeiberDivergence.h
inst/include/shark/Rng/HyperGeometric.h
inst/include/shark/Rng/Dirichlet.h
inst/include/shark/Rng/Gamma.h
inst/include/shark/Rng/DiffGeometric.h
inst/include/shark/Rng/Poisson.h
tests
tests/testthat.R
tests/testthat
tests/testthat/test_BSGD.R
src
src/Makevars
src/src
src/src/Algorithms
src/src/Algorithms/LinearRegression.cpp
src/src/Algorithms/NormalizeComponentsWhitening.cpp
src/src/Algorithms/CARTcommon.cpp
src/src/Algorithms/FisherLDA.cpp
src/src/Algorithms/LDA.cpp
src/src/Algorithms/PCA.cpp
src/src/Algorithms/KMeans.cpp
src/src/Algorithms/RFTrainer.cpp
src/src/Algorithms/CARTTrainer.cpp
src/src/Algorithms/SigmoidFit.cpp
src/src/Algorithms/DirectSearch
src/src/Algorithms/DirectSearch/ElitistCMA.cpp
src/src/Algorithms/DirectSearch/CrossEntropyMethod.cpp
src/src/Algorithms/DirectSearch/CMSA.cpp
src/src/Algorithms/DirectSearch/CMA.cpp
src/src/Algorithms/GradientDescent
src/src/Algorithms/GradientDescent/BFGS.cpp
src/src/Algorithms/GradientDescent/Rprop.cpp
src/src/Algorithms/GradientDescent/TrustRegionNewton.cpp
src/src/Algorithms/GradientDescent/LBFGS.cpp
src/src/Algorithms/GradientDescent/CG.cpp
src/src/Algorithms/GradientDescent/AbstractLineSearchOptimizer.cpp
src/src/ObjectiveFunctions
src/src/ObjectiveFunctions/DiscreteLoss.cpp
src/src/ObjectiveFunctions/KernelBasisDistance.cpp
src/src/ObjectiveFunctions/ROC.cpp
src/src/Models
src/src/Models/SigmoidModel.cpp
src/src/Models/Softmax.cpp
src/src/Models/OnlineRNNet.cpp
src/src/Models/Centroids.cpp
src/src/Models/LinearNorm.cpp
src/src/Models/RNNet.cpp
src/src/Models/Converter.cpp
src/src/Models/CMAC.cpp
src/src/Models/RBFLayer.cpp
src/src/Models/RecurrentStructure.cpp
src/src/Data
src/src/Data/Csv.cpp
src/src/Data/SparseData.cpp
src/src/Version.cpp
src/shark
src/shark/Algorithms
src/shark/Algorithms/AbstractMultiObjectiveOptimizer.h
src/shark/Algorithms/JaakkolaHeuristic.h
src/shark/Algorithms/Pegasos.h
src/shark/Algorithms/QP
src/shark/Algorithms/QP/QpMcBoxDecomp.h
src/shark/Algorithms/QP/QpSparseArray.h
src/shark/Algorithms/QP/QuadraticProgram.h
src/shark/Algorithms/QP/QpBoxLinear.h
src/shark/Algorithms/QP/QpMcLinear.h
src/shark/Algorithms/QP/Impl
src/shark/Algorithms/QP/Impl/AnalyticProblems.h
src/shark/Algorithms/QP/SvmProblems.h
src/shark/Algorithms/QP/BoxConstrainedProblems.h
src/shark/Algorithms/QP/QpSolver.h
src/shark/Algorithms/QP/QpMcSimplexDecomp.h
src/shark/Algorithms/StoppingCriteria
src/shark/Algorithms/StoppingCriteria/TrainingError.h
src/shark/Algorithms/StoppingCriteria/MaxIterations.h
src/shark/Algorithms/StoppingCriteria/AbstractStoppingCriterion.h
src/shark/Algorithms/StoppingCriteria/GeneralizationLoss.h
src/shark/Algorithms/StoppingCriteria/GeneralizationQuotient.h
src/shark/Algorithms/StoppingCriteria/TrainingProgress.h
src/shark/Algorithms/StoppingCriteria/ValidatedStoppingCriterion.h
src/shark/Algorithms/Trainers
src/shark/Algorithms/Trainers/AbstractSvmTrainer.h
src/shark/Algorithms/Trainers/CARTcommon.h
src/shark/Algorithms/Trainers/RFTrainer.h
src/shark/Algorithms/Trainers/Perceptron.h
src/shark/Algorithms/Trainers/NormalizeComponentsUnitVariance.h
src/shark/Algorithms/Trainers/RankingSvmTrainer.h
src/shark/Algorithms/Trainers/MissingFeatureSvmTrainer.h
src/shark/Algorithms/Trainers/AbstractWeightedTrainer.h
src/shark/Algorithms/Trainers/LassoRegression.h
src/shark/Algorithms/Trainers/NormalizeComponentsZCA.h
src/shark/Algorithms/Trainers/LinearRegression.h
src/shark/Algorithms/Trainers/OneClassSvmTrainer.h
src/shark/Algorithms/Trainers/PCA.h
src/shark/Algorithms/Trainers/SigmoidFit.h
src/shark/Algorithms/Trainers/OptimizationTrainer.h
src/shark/Algorithms/Trainers/CARTTrainer.h
src/shark/Algorithms/Trainers/NormalizeKernelUnitVariance.h
src/shark/Algorithms/Trainers/NormalizeComponentsUnitInterval.h
src/shark/Algorithms/Trainers/CSvmTrainer.h
src/shark/Algorithms/Trainers/KernelMeanClassifier.h
src/shark/Algorithms/Trainers/LDA.h
src/shark/Algorithms/Trainers/KernelSGDTrainer.h
src/shark/Algorithms/Trainers/AbstractTrainer.h
src/shark/Algorithms/Trainers/NBClassifierTrainer.h
src/shark/Algorithms/Trainers/RegularizationNetworkTrainer.h
src/shark/Algorithms/Trainers/LinearSAGTrainer.h
src/shark/Algorithms/Trainers/FisherLDA.h
src/shark/Algorithms/Trainers/Distribution
src/shark/Algorithms/Trainers/Distribution/NormalTrainer.h
src/shark/Algorithms/Trainers/Distribution/DistTrainerContainer.h
src/shark/Algorithms/Trainers/Distribution/GenericDistTrainer.h
src/shark/Algorithms/Trainers/NormalizeComponentsWhitening.h
src/shark/Algorithms/Trainers/EpsilonSvmTrainer.h
src/shark/Algorithms/Trainers/Budgeted
src/shark/Algorithms/Trainers/Budgeted/KernelBudgetedSGDTrainer.h
src/shark/Algorithms/Trainers/Budgeted/AbstractBudgetMaintenanceStrategy.h
src/shark/Algorithms/Trainers/Budgeted/ProjectBudgetMaintenanceStrategy.h
src/shark/Algorithms/Trainers/Budgeted/MergeBudgetMaintenanceStrategy.h
src/shark/Algorithms/Trainers/Budgeted/RemoveBudgetMaintenanceStrategy.h
src/shark/Algorithms/NearestNeighbors
src/shark/Algorithms/NearestNeighbors/TreeNearestNeighbors.h
src/shark/Algorithms/NearestNeighbors/AbstractNearestNeighbors.h
src/shark/Algorithms/NearestNeighbors/SimpleNearestNeighbors.h
src/shark/Algorithms/DirectSearch
src/shark/Algorithms/DirectSearch/Individual.h
src/shark/Algorithms/DirectSearch/VDCMA.h
src/shark/Algorithms/DirectSearch/GridSearch.h
src/shark/Algorithms/DirectSearch/Operators
src/shark/Algorithms/DirectSearch/Operators/Hypervolume
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeCalculatorMDHOY.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeSubsetSelection2D.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeContributionMD.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeCalculator3D.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeCalculator2D.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeContribution3D.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeCalculator.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeCalculatorMDWFG.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeContribution2D.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeApproximator.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HypervolumeContribution.h
src/shark/Algorithms/DirectSearch/Operators/Hypervolume/HVContrApproximator.h
src/shark/Algorithms/DirectSearch/Operators/Domination
src/shark/Algorithms/DirectSearch/Operators/Domination/DCNonDominatedSort.h
src/shark/Algorithms/DirectSearch/Operators/Domination/ParetoDominance.h
src/shark/Algorithms/DirectSearch/Operators/Domination/FastNonDominatedSort.h
src/shark/Algorithms/DirectSearch/Operators/Domination/NonDominatedSort.h
src/shark/Algorithms/DirectSearch/Operators/TwoPointStepSizeAdaptation.h
src/shark/Algorithms/DirectSearch/Operators/PopulationBasedStepSizeAdaptation.h
src/shark/Algorithms/DirectSearch/Operators/Evaluation
src/shark/Algorithms/DirectSearch/Operators/Evaluation/PenalizingEvaluator.h
src/shark/Algorithms/DirectSearch/Operators/Indicators
src/shark/Algorithms/DirectSearch/Operators/Indicators/AdditiveEpsilonIndicator.h
src/shark/Algorithms/DirectSearch/Operators/Indicators/HypervolumeIndicator.h
src/shark/Algorithms/DirectSearch/Operators/Mutation
src/shark/Algorithms/DirectSearch/Operators/Mutation/PolynomialMutation.h
src/shark/Algorithms/DirectSearch/Operators/Mutation/BitflipMutator.h
src/shark/Algorithms/DirectSearch/Operators/Selection
src/shark/Algorithms/DirectSearch/Operators/Selection/RouletteWheelSelection.h
src/shark/Algorithms/DirectSearch/Operators/Selection/LinearRanking.h
src/shark/Algorithms/DirectSearch/Operators/Selection/UniformRanking.h
src/shark/Algorithms/DirectSearch/Operators/Selection/EPTournamentSelection.h
src/shark/Algorithms/DirectSearch/Operators/Selection/ElitistSelection.h
src/shark/Algorithms/DirectSearch/Operators/Selection/TournamentSelection.h
src/shark/Algorithms/DirectSearch/Operators/Selection/IndicatorBasedSelection.h
src/shark/Algorithms/DirectSearch/Operators/Recombination
src/shark/Algorithms/DirectSearch/Operators/Recombination/OnePointCrossover.h
src/shark/Algorithms/DirectSearch/Operators/Recombination/PartiallyMappedCrossover.h
src/shark/Algorithms/DirectSearch/Operators/Recombination/SimulatedBinaryCrossover.h
src/shark/Algorithms/DirectSearch/Operators/Recombination/UniformCrossover.h
src/shark/Algorithms/DirectSearch/SimplexDownhill.h
src/shark/Algorithms/DirectSearch/CMA.h
src/shark/Algorithms/DirectSearch/LMCMA.h
src/shark/Algorithms/DirectSearch/ElitistCMA.h
src/shark/Algorithms/DirectSearch/Grid.h
src/shark/Algorithms/DirectSearch/SteadyStateMOCMA.h
src/shark/Algorithms/DirectSearch/CMSA.h
src/shark/Algorithms/DirectSearch/MOCMA.h
src/shark/Algorithms/DirectSearch/CrossEntropyMethod.h
src/shark/Algorithms/DirectSearch/RealCodedNSGAII.h
src/shark/Algorithms/DirectSearch/CMA
src/shark/Algorithms/DirectSearch/CMA/CMAIndividual.h
src/shark/Algorithms/DirectSearch/CMA/Chromosome.h
src/shark/Algorithms/DirectSearch/SMS-EMOA.h
src/shark/Algorithms/KMeans.h
src/shark/Algorithms/GradientDescent
src/shark/Algorithms/GradientDescent/LBFGS.h
src/shark/Algorithms/GradientDescent/BFGS.h
src/shark/Algorithms/GradientDescent/LineSearch.h
src/shark/Algorithms/GradientDescent/AbstractLineSearchOptimizer.h
src/shark/Algorithms/GradientDescent/SteepestDescent.h
src/shark/Algorithms/GradientDescent/Impl
src/shark/Algorithms/GradientDescent/Impl/wolfecubic.inl
src/shark/Algorithms/GradientDescent/Impl/dlinmin.inl
src/shark/Algorithms/GradientDescent/TrustRegionNewton.h
src/shark/Algorithms/GradientDescent/CG.h
src/shark/Algorithms/GradientDescent/Rprop.h
src/shark/Algorithms/AbstractOptimizer.h
src/shark/Algorithms/AbstractSingleObjectiveOptimizer.h
src/shark/LinAlg
src/shark/LinAlg/BlockMatrix2x2.h
src/shark/LinAlg/Initialize.h
src/shark/LinAlg/LRUCache.h
src/shark/LinAlg/GaussianKernelMatrix.h
src/shark/LinAlg/RegularizedKernelMatrix.h
src/shark/LinAlg/Metrics.h
src/shark/LinAlg/CachedMatrix.h
src/shark/LinAlg/BLAS
src/shark/LinAlg/BLAS/matrix_expression.hpp
src/shark/LinAlg/BLAS/decompositions.hpp
src/shark/LinAlg/BLAS/matrix_sparse.hpp
src/shark/LinAlg/BLAS/expression_types.hpp
src/shark/LinAlg/BLAS/solve.hpp
src/shark/LinAlg/BLAS/remora.hpp
src/shark/LinAlg/BLAS/matrix.hpp
src/shark/LinAlg/BLAS/matrix_proxy.hpp
src/shark/LinAlg/BLAS/vector_proxy.hpp
src/shark/LinAlg/BLAS/io.hpp
src/shark/LinAlg/BLAS/permutation.hpp
src/shark/LinAlg/BLAS/vector_sparse.hpp
src/shark/LinAlg/BLAS/detail
src/shark/LinAlg/BLAS/detail/evaluation_tags.hpp
src/shark/LinAlg/BLAS/detail/expression_optimizers.hpp
src/shark/LinAlg/BLAS/detail/storage.hpp
src/shark/LinAlg/BLAS/detail/functional.hpp
src/shark/LinAlg/BLAS/detail/vector_expression_classes.hpp
src/shark/LinAlg/BLAS/detail/matrix_expression_classes.hpp
src/shark/LinAlg/BLAS/detail/traits.hpp
src/shark/LinAlg/BLAS/detail/vector_proxy_classes.hpp
src/shark/LinAlg/BLAS/detail/structure.hpp
src/shark/LinAlg/BLAS/detail/iterator.hpp
src/shark/LinAlg/BLAS/detail/check.hpp
src/shark/LinAlg/BLAS/detail/matrix_proxy_classes.hpp
src/shark/LinAlg/BLAS/kernels
src/shark/LinAlg/BLAS/kernels/sum_rows.hpp
src/shark/LinAlg/BLAS/kernels/conv2d.hpp
src/shark/LinAlg/BLAS/kernels/vector_fold.hpp
src/shark/LinAlg/BLAS/kernels/potrf.hpp
src/shark/LinAlg/BLAS/kernels/vector_assign.hpp
src/shark/LinAlg/BLAS/kernels/atlas
src/shark/LinAlg/BLAS/kernels/atlas/potrf.hpp
src/shark/LinAlg/BLAS/kernels/cblas
src/shark/LinAlg/BLAS/kernels/cblas/trsv.hpp
src/shark/LinAlg/BLAS/kernels/cblas/trsm.hpp
src/shark/LinAlg/BLAS/kernels/cblas/syrk.hpp
src/shark/LinAlg/BLAS/kernels/cblas/trmm.hpp
src/shark/LinAlg/BLAS/kernels/cblas/tpmv.hpp
src/shark/LinAlg/BLAS/kernels/cblas/dense_gemm.hpp
src/shark/LinAlg/BLAS/kernels/cblas/trmv.hpp
src/shark/LinAlg/BLAS/kernels/cblas/cblas_inc.hpp
src/shark/LinAlg/BLAS/kernels/cblas/gemv.hpp
src/shark/LinAlg/BLAS/kernels/pstrf.hpp
src/shark/LinAlg/BLAS/kernels/trsv.hpp
src/shark/LinAlg/BLAS/kernels/trsm.hpp
src/shark/LinAlg/BLAS/kernels/syev.hpp
src/shark/LinAlg/BLAS/kernels/syrk.hpp
src/shark/LinAlg/BLAS/kernels/vector_max.hpp
src/shark/LinAlg/BLAS/kernels/getrf.hpp
src/shark/LinAlg/BLAS/kernels/trmm.hpp
src/shark/LinAlg/BLAS/kernels/matrix_fold.hpp
src/shark/LinAlg/BLAS/kernels/matrix_assign.hpp
src/shark/LinAlg/BLAS/kernels/tpmv.hpp
src/shark/LinAlg/BLAS/kernels/default
src/shark/LinAlg/BLAS/kernels/default/sum_rows.hpp
src/shark/LinAlg/BLAS/kernels/default/conv2d.hpp
src/shark/LinAlg/BLAS/kernels/default/vector_fold.hpp
src/shark/LinAlg/BLAS/kernels/default/potrf.hpp
src/shark/LinAlg/BLAS/kernels/default/vector_assign.hpp
src/shark/LinAlg/BLAS/kernels/default/pstrf.hpp
src/shark/LinAlg/BLAS/kernels/default/trsv.hpp
src/shark/LinAlg/BLAS/kernels/default/trsm.hpp
src/shark/LinAlg/BLAS/kernels/default/syev.hpp
src/shark/LinAlg/BLAS/kernels/default/syrk.hpp
src/shark/LinAlg/BLAS/kernels/default/vector_max.hpp
src/shark/LinAlg/BLAS/kernels/default/getrf.hpp
src/shark/LinAlg/BLAS/kernels/default/trmm.hpp
src/shark/LinAlg/BLAS/kernels/default/mgemm.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align
src/shark/LinAlg/BLAS/kernels/default/boost_align/aligned_allocator.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/aligned_alloc.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned_intel.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned_gcc.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned_clang.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/is_alignment_c.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_sunos.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_macos.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/is_alignment.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/max_objects.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_posix.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_msvc.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/max_size.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/aligned_alloc_a.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/detail/assume_aligned_msvc.hpp
src/shark/LinAlg/BLAS/kernels/default/boost_align/assume_aligned.hpp
src/shark/LinAlg/BLAS/kernels/default/simple_proxies.hpp
src/shark/LinAlg/BLAS/kernels/default/matrix_fold.hpp
src/shark/LinAlg/BLAS/kernels/default/simd.hpp
src/shark/LinAlg/BLAS/kernels/default/matrix_assign.hpp
src/shark/LinAlg/BLAS/kernels/default/tpmv.hpp
src/shark/LinAlg/BLAS/kernels/default/dense_gemm.hpp
src/shark/LinAlg/BLAS/kernels/default/dot.hpp
src/shark/LinAlg/BLAS/kernels/default/trmv.hpp
src/shark/LinAlg/BLAS/kernels/default/gemm.hpp
src/shark/LinAlg/BLAS/kernels/default/gemv.hpp
src/shark/LinAlg/BLAS/kernels/dot.hpp
src/shark/LinAlg/BLAS/kernels/lapack
src/shark/LinAlg/BLAS/kernels/lapack/fortran.hpp
src/shark/LinAlg/BLAS/kernels/lapack/syev.hpp
src/shark/LinAlg/BLAS/kernels/trmv.hpp
src/shark/LinAlg/BLAS/kernels/gpu
src/shark/LinAlg/BLAS/kernels/gpu/sum_rows.hpp
src/shark/LinAlg/BLAS/kernels/gpu/vector_fold.hpp
src/shark/LinAlg/BLAS/kernels/gpu/vector_assign.hpp
src/shark/LinAlg/BLAS/kernels/gpu/trsv.hpp
src/shark/LinAlg/BLAS/kernels/gpu/trsm.hpp
src/shark/LinAlg/BLAS/kernels/gpu/syrk.hpp
src/shark/LinAlg/BLAS/kernels/gpu/vector_max.hpp
src/shark/LinAlg/BLAS/kernels/gpu/trmm.hpp
src/shark/LinAlg/BLAS/kernels/gpu/matrix_fold.hpp
src/shark/LinAlg/BLAS/kernels/gpu/matrix_assign.hpp
src/shark/LinAlg/BLAS/kernels/gpu/dot.hpp
src/shark/LinAlg/BLAS/kernels/gpu/trmv.hpp
src/shark/LinAlg/BLAS/kernels/gpu/gemm.hpp
src/shark/LinAlg/BLAS/kernels/gpu/gemv.hpp
src/shark/LinAlg/BLAS/kernels/gemm.hpp
src/shark/LinAlg/BLAS/kernels/gemv.hpp
src/shark/LinAlg/BLAS/vector.hpp
src/shark/LinAlg/BLAS/gpu
src/shark/LinAlg/BLAS/gpu/traits.hpp
src/shark/LinAlg/BLAS/gpu/matrix.hpp
src/shark/LinAlg/BLAS/gpu/vector.hpp
src/shark/LinAlg/BLAS/gpu/copy.hpp
src/shark/LinAlg/BLAS/assignment.hpp
src/shark/LinAlg/BLAS/vector_expression.hpp
src/shark/LinAlg/BLAS/triangular_matrix.hpp
src/shark/LinAlg/eigenvalues.h
src/shark/LinAlg/Base.h
src/shark/LinAlg/KernelMatrix.h
src/shark/LinAlg/ModifiedKernelMatrix.h
src/shark/LinAlg/PrecomputedMatrix.h
src/shark/LinAlg/Impl
src/shark/LinAlg/Impl/Initialize.h
src/shark/LinAlg/PartlyPrecomputedMatrix.h
src/shark/LinAlg/ExampleModifiedKernelMatrix.h
src/shark/LinAlg/DifferenceKernelMatrix.h
src/shark/LinAlg/rotations.h
src/shark/LinAlg/Tools.h
src/shark/Core
src/shark/Core/DLLSupport.h
src/shark/Core/Shark.h
src/shark/Core/utility
src/shark/Core/utility/Range.h
src/shark/Core/utility/ScopedHandle.h
src/shark/Core/utility/Iterators.h
src/shark/Core/utility/Impl
src/shark/Core/utility/Impl/boost_iterator_facade_fixed.hpp
src/shark/Core/utility/functional.h
src/shark/Core/utility/KeyValuePair.h
src/shark/Core/utility/ZipPair.h
src/shark/Core/utility/CanBeCalled.h
src/shark/Core/Math.h
src/shark/Core/OpenMP.h
src/shark/Core/Exception.h
src/shark/Core/Traits
src/shark/Core/Traits/ProxyReferenceTraits.h
src/shark/Core/Timer.h
src/shark/Core/Flags.h
src/shark/Core/State.h
src/shark/Core/ResultSets.h
src/shark/Core/IParameterizable.h
src/shark/Core/INameable.h
src/shark/Unsupervised
src/shark/Unsupervised/RBM
src/shark/Unsupervised/RBM/Neuronlayers
src/shark/Unsupervised/RBM/Neuronlayers/BipolarLayer.h
src/shark/Unsupervised/RBM/Neuronlayers/BinaryLayer.h
src/shark/Unsupervised/RBM/Neuronlayers/GaussianLayer.h
src/shark/Unsupervised/RBM/Neuronlayers/TruncatedExponentialLayer.h
src/shark/Unsupervised/RBM/Problems
src/shark/Unsupervised/RBM/Problems/Shifter.h
src/shark/Unsupervised/RBM/Problems/MNIST.h
src/shark/Unsupervised/RBM/Problems/DistantModes.h
src/shark/Unsupervised/RBM/Problems/BarsAndStripes.h
src/shark/Unsupervised/RBM/RBM.h
src/shark/Unsupervised/RBM/ConvolutionalRBM.h
src/shark/Unsupervised/RBM/BipolarRBM.h
src/shark/Unsupervised/RBM/Sampling
src/shark/Unsupervised/RBM/Sampling/EnergyStoringTemperedMarkovChain.h
src/shark/Unsupervised/RBM/Sampling/GibbsOperator.h
src/shark/Unsupervised/RBM/Sampling/TemperedMarkovChain.h
src/shark/Unsupervised/RBM/Sampling/Impl
src/shark/Unsupervised/RBM/Sampling/Impl/SampleTypes.h
src/shark/Unsupervised/RBM/Sampling/MarkovChain.h
src/shark/Unsupervised/RBM/TruncExpBinaryRBM.h
src/shark/Unsupervised/RBM/Tags.h
src/shark/Unsupervised/RBM/GradientApproximations
src/shark/Unsupervised/RBM/GradientApproximations/ContrastiveDivergence.h
src/shark/Unsupervised/RBM/GradientApproximations/SingleChainApproximator.h
src/shark/Unsupervised/RBM/GradientApproximations/Impl
src/shark/Unsupervised/RBM/GradientApproximations/Impl/DataEvaluator.h
src/shark/Unsupervised/RBM/GradientApproximations/ExactGradient.h
src/shark/Unsupervised/RBM/GradientApproximations/MultiChainApproximator.h
src/shark/Unsupervised/RBM/analytics.h
src/shark/Unsupervised/RBM/Impl
src/shark/Unsupervised/RBM/Impl/ConvolutionalEnergyGradient.h
src/shark/Unsupervised/RBM/Impl/analytics.h
src/shark/Unsupervised/RBM/Impl/AverageEnergyGradient.h
src/shark/Unsupervised/RBM/GaussianBinaryRBM.h
src/shark/Unsupervised/RBM/StateSpaces
src/shark/Unsupervised/RBM/StateSpaces/RealSpace.h
src/shark/Unsupervised/RBM/StateSpaces/TwoStateSpace.h
src/shark/Unsupervised/RBM/Energy.h
src/shark/Unsupervised/RBM/ConvolutionalBinaryRBM.h
src/shark/Unsupervised/RBM/BinaryRBM.h
src/shark/ObjectiveFunctions
src/shark/ObjectiveFunctions/EvaluationArchive.h
src/shark/ObjectiveFunctions/SparseAutoencoderError.h
src/shark/ObjectiveFunctions/LooErrorCSvm.h
src/shark/ObjectiveFunctions/NegativeAUC.h
src/shark/ObjectiveFunctions/Benchmarks
src/shark/ObjectiveFunctions/Benchmarks/IHR2.h
src/shark/ObjectiveFunctions/Benchmarks/DTLZ1.h
src/shark/ObjectiveFunctions/Benchmarks/ELLI2.h
src/shark/ObjectiveFunctions/Benchmarks/LZ4.h
src/shark/ObjectiveFunctions/Benchmarks/CIGTAB1.h
src/shark/ObjectiveFunctions/Benchmarks/LZ3.h
src/shark/ObjectiveFunctions/Benchmarks/ZDT4.h
src/shark/ObjectiveFunctions/Benchmarks/PoleSimulators
src/shark/ObjectiveFunctions/Benchmarks/PoleSimulators/SinglePole.h
src/shark/ObjectiveFunctions/Benchmarks/PoleSimulators/DoublePole.h
src/shark/ObjectiveFunctions/Benchmarks/MultiObjectiveBenchmark.h
src/shark/ObjectiveFunctions/Benchmarks/LZ8.h
src/shark/ObjectiveFunctions/Benchmarks/LZ1.h
src/shark/ObjectiveFunctions/Benchmarks/DTLZ6.h
src/shark/ObjectiveFunctions/Benchmarks/RotatedErrorFunction.h
src/shark/ObjectiveFunctions/Benchmarks/IHR4.h
src/shark/ObjectiveFunctions/Benchmarks/Benchmarks.h
src/shark/ObjectiveFunctions/Benchmarks/MarkovPole.h
src/shark/ObjectiveFunctions/Benchmarks/DTLZ7.h
src/shark/ObjectiveFunctions/Benchmarks/Discus.h
src/shark/ObjectiveFunctions/Benchmarks/DiffPowers.h
src/shark/ObjectiveFunctions/Benchmarks/Himmelblau.h
src/shark/ObjectiveFunctions/Benchmarks/ZDT1.h
src/shark/ObjectiveFunctions/Benchmarks/IHR6.h
src/shark/ObjectiveFunctions/Benchmarks/IHR3.h
src/shark/ObjectiveFunctions/Benchmarks/Ackley.h
src/shark/ObjectiveFunctions/Benchmarks/CigarDiscus.h
src/shark/ObjectiveFunctions/Benchmarks/LZ5.h
src/shark/ObjectiveFunctions/Benchmarks/ZDT3.h
src/shark/ObjectiveFunctions/Benchmarks/LZ7.h
src/shark/ObjectiveFunctions/Benchmarks/ConstrainedSphere.h
src/shark/ObjectiveFunctions/Benchmarks/GruauPole.h
src/shark/ObjectiveFunctions/Benchmarks/Sphere.h
src/shark/ObjectiveFunctions/Benchmarks/DTLZ3.h
src/shark/ObjectiveFunctions/Benchmarks/ELLI1.h
src/shark/ObjectiveFunctions/Benchmarks/NonMarkovPole.h
src/shark/ObjectiveFunctions/Benchmarks/GSP.h
src/shark/ObjectiveFunctions/Benchmarks/DTLZ5.h
src/shark/ObjectiveFunctions/Benchmarks/Fonseca.h
src/shark/ObjectiveFunctions/Benchmarks/Rosenbrock.h
src/shark/ObjectiveFunctions/Benchmarks/LZ6.h
src/shark/ObjectiveFunctions/Benchmarks/LZ2.h
src/shark/ObjectiveFunctions/Benchmarks/CIGTAB2.h
src/shark/ObjectiveFunctions/Benchmarks/Schwefel.h
src/shark/ObjectiveFunctions/Benchmarks/ZDT2.h
src/shark/ObjectiveFunctions/Benchmarks/LZ9.h
src/shark/ObjectiveFunctions/Benchmarks/DTLZ4.h
src/shark/ObjectiveFunctions/Benchmarks/IHR1.h
src/shark/ObjectiveFunctions/Benchmarks/ZDT6.h
src/shark/ObjectiveFunctions/Benchmarks/DTLZ2.h
src/shark/ObjectiveFunctions/Benchmarks/Ellipsoid.h
src/shark/ObjectiveFunctions/Benchmarks/Cigar.h
src/shark/ObjectiveFunctions/NegativeGaussianProcessEvidence.h
src/shark/ObjectiveFunctions/KernelTargetAlignment.h
src/shark/ObjectiveFunctions/BoxConstraintHandler.h
src/shark/ObjectiveFunctions/Regularizer.h
src/shark/ObjectiveFunctions/NoisyErrorFunction.h
src/shark/ObjectiveFunctions/ErrorFunction.h
src/shark/ObjectiveFunctions/Impl
src/shark/ObjectiveFunctions/Impl/NoisyErrorFunction.inl
src/shark/ObjectiveFunctions/Impl/ErrorFunction.inl
src/shark/ObjectiveFunctions/Impl/FunctionWrapperBase.h
src/shark/ObjectiveFunctions/Impl/SparseAutoencoderError.inl
src/shark/ObjectiveFunctions/Loss
src/shark/ObjectiveFunctions/Loss/AbsoluteLoss.h
src/shark/ObjectiveFunctions/Loss/EpsilonHingeLoss.h
src/shark/ObjectiveFunctions/Loss/AbstractLoss.h
src/shark/ObjectiveFunctions/Loss/SquaredLoss.h
src/shark/ObjectiveFunctions/Loss/TukeyBiweightLoss.h
src/shark/ObjectiveFunctions/Loss/HingeLoss.h
src/shark/ObjectiveFunctions/Loss/SquaredEpsilonHingeLoss.h
src/shark/ObjectiveFunctions/Loss/DiscreteLoss.h
src/shark/ObjectiveFunctions/Loss/ZeroOneLoss.h
src/shark/ObjectiveFunctions/Loss/SquaredHingeLoss.h
src/shark/ObjectiveFunctions/Loss/CrossEntropy.h
src/shark/ObjectiveFunctions/Loss/HuberLoss.h
src/shark/ObjectiveFunctions/AbstractCost.h
src/shark/ObjectiveFunctions/CrossValidationError.h
src/shark/ObjectiveFunctions/AbstractObjectiveFunction.h
src/shark/ObjectiveFunctions/NegativeLogLikelihood.h
src/shark/ObjectiveFunctions/AbstractConstraintHandler.h
src/shark/ObjectiveFunctions/RadiusMarginQuotient.h
src/shark/ObjectiveFunctions/CombinedObjectiveFunction.h
src/shark/ObjectiveFunctions/ROC.h
src/shark/ObjectiveFunctions/KernelBasisDistance.h
src/shark/ObjectiveFunctions/SvmLogisticInterpretation.h
src/shark/ObjectiveFunctions/LooError.h
src/shark/Statistics
src/shark/Statistics/Statistics.h
src/shark/Statistics/Distributions
src/shark/Statistics/Distributions/MultiNomialDistribution.h
src/shark/Statistics/Distributions/MultiVariateNormalDistribution.h
src/shark/Models
src/shark/Models/MeanModel.h
src/shark/Models/RBFLayer.h
src/shark/Models/Softmax.h
src/shark/Models/SoftNearestNeighborClassifier.h
src/shark/Models/CMAC.h
src/shark/Models/Neurons.h
src/shark/Models/Kernels
src/shark/Models/Kernels/DiscreteKernel.h
src/shark/Models/Kernels/GaussianRbfKernel.h
src/shark/Models/Kernels/LinearKernel.h
src/shark/Models/Kernels/KernelHelpers.h
src/shark/Models/Kernels/WeightedSumKernel.h
src/shark/Models/Kernels/SubrangeKernel.h
src/shark/Models/Kernels/MultiTaskKernel.h
src/shark/Models/Kernels/MissingFeaturesKernelExpansion.h
src/shark/Models/Kernels/MklKernel.h
src/shark/Models/Kernels/ScaledKernel.h
src/shark/Models/Kernels/ModelKernel.h
src/shark/Models/Kernels/MonomialKernel.h
src/shark/Models/Kernels/PolynomialKernel.h
src/shark/Models/Kernels/AbstractKernelFunction.h
src/shark/Models/Kernels/Impl
src/shark/Models/Kernels/Impl/MklKernelBase.h
src/shark/Models/Kernels/AbstractMetric.h
src/shark/Models/Kernels/NormalizedKernel.h
src/shark/Models/Kernels/ArdKernel.h
src/shark/Models/Kernels/ProductKernel.h
src/shark/Models/Kernels/CSvmDerivative.h
src/shark/Models/Kernels/KernelExpansion.h
src/shark/Models/Kernels/EvalSkipMissingFeatures.h
src/shark/Models/LinearModel.h
src/shark/Models/ConvexCombination.h
src/shark/Models/NearestNeighborClassifier.h
src/shark/Models/OnlineRNNet.h
src/shark/Models/Converter.h
src/shark/Models/TiedAutoencoder.h
src/shark/Models/Trees
src/shark/Models/Trees/LCTree.h
src/shark/Models/Trees/KHCTree.h
src/shark/Models/Trees/KDTree.h
src/shark/Models/Trees/CARTClassifier.h
src/shark/Models/Trees/General.h
src/shark/Models/Trees/RFClassifier.h
src/shark/Models/Trees/BinaryTree.h
src/shark/Models/GaussianNoiseModel.h
src/shark/Models/LinearClassifier.h
src/shark/Models/LinearNorm.h
src/shark/Models/FFNet.h
src/shark/Models/Clustering
src/shark/Models/Clustering/AbstractClustering.h
src/shark/Models/Clustering/Centroids.h
src/shark/Models/Clustering/ClusteringModel.h
src/shark/Models/Clustering/HierarchicalClustering.h
src/shark/Models/Clustering/HardClusteringModel.h
src/shark/Models/Clustering/SoftClusteringModel.h
src/shark/Models/ConcatenatedModel.h
src/shark/Models/SigmoidModel.h
src/shark/Models/ImpulseNoiseModel.h
src/shark/Models/OneVersusOneClassifier.h
src/shark/Models/NearestNeighborRegression.h
src/shark/Models/AbstractModel.h
src/shark/Models/Normalizer.h
src/shark/Models/NBClassifier.h
src/shark/Models/RecurrentStructure.h
src/shark/Models/RNNet.h
src/shark/Models/Autoencoder.h
src/shark/Data
src/shark/Data/Download.h
src/shark/Data/ExportKernelMatrix.h
src/shark/Data/SparseData.h
src/shark/Data/DataView.h
src/shark/Data/BatchInterfaceAdaptStruct.h
src/shark/Data/Statistics.h
src/shark/Data/Csv.h
src/shark/Data/Libsvm.h
src/shark/Data/Impl
src/shark/Data/Impl/Downloader.hpp
src/shark/Data/Impl/BoostFusionCopy.hpp
src/shark/Data/Impl/BoostFusion151DefineStructInl.hpp
src/shark/Data/Impl/Statistics.inl
src/shark/Data/Impl/CVDatasetTools.inl
src/shark/Data/Impl/Dataset.inl
src/shark/Data/BatchInterface.h
src/shark/Data/LabelOrder.h
src/shark/Data/HDF5.h
src/shark/Data/DataDistribution.h
src/shark/Data/Pgm.h
src/shark/Data/Dataset.h
src/shark/Data/CVDatasetTools.h
src/shark/Data/WeightedDataset.h
src/shark/Rng
src/shark/Rng/Rng.h
src/shark/Rng/DiscreteUniform.h
src/shark/Rng/Cauchy.h
src/shark/Rng/Geometric.h
src/shark/Rng/Uniform.h
src/shark/Rng/LogNormal.h
src/shark/Rng/Runif.h
src/shark/Rng/Bernoulli.h
src/shark/Rng/AbstractDistribution.h
src/shark/Rng/Weibull.h
src/shark/Rng/TruncatedExponential.h
src/shark/Rng/GlobalRng.h
src/shark/Rng/NegExponential.h
src/shark/Rng/Normal.h
src/shark/Rng/Erlang.h
src/shark/Rng/Entropy.h
src/shark/Rng/Binomial.h
src/shark/Rng/KullbackLeiberDivergence.h
src/shark/Rng/HyperGeometric.h
src/shark/Rng/Dirichlet.h
src/shark/Rng/Gamma.h
src/shark/Rng/DiffGeometric.h
src/shark/Rng/Poisson.h
src/utils.h
src/utils.cpp
src/DeepNetworkWrapper.cpp
src/init.c
src/RcppExports.cpp
src/BSGDWrapper.cpp
NAMESPACE
R
R/DeepNetwork.R
R/BSGD.R
R/inline.R
R/RcppExports.R
R/RcppShark.package.skeleton.R
R/RcppShark.R
R/zzz.R
R/flags.R
vignettes
vignettes/RcppShark.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/SharkBSGDPredict.Rd
man/DeepNetworkTrain.Rd
man/RcppShark.Rd
man/SharkBSGDTrain.Rd
man/DeepNetworkPredict.Rd
man/RcppShark.package.skeleton.Rd
cleanup
tools
tools/loop.R
tools/prepareShark.py
tools/Runif.h
tools/GlobalRng.h
tools/sharkHeader.h
tools/generateMakevars.py
tools/Makevars_template
tools/loop2.R
