Relatedness: An Algorithm to Infer Relatedness
Version 1.4

Inference of relatedness coefficients from a bi-allelic genotype matrix using a Maximum Likelihood estimation.

Browse man pages Browse package API and functions Browse package files

AuthorFabien Laporte
Date of publication2016-06-03 19:07:38
MaintainerFabien Laporte <fabien.laporte@moulon.inra.fr>
LicenseAGPL-3
Version1.4
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Relatedness")

Man pages

BoucleEMacc: C code for the EM
Cross: Crossing matrix
Delta: List of Relatedness Coefficients
Frequencies: Allele Frequencies
Genotype: Genotype Matrix
Relatedness-package: An Algorithm to Infer Relatedness
RelCoef: Relatedness Coefficients Estimation for individuals
RelCoefLine: Relatedness Coefficients Estimation for Lines
RelComb: Computation of Linear Combination of Relatedness Coefficients

Functions

AddDiag Source code
BoucleEMacc Man page
ClassIBSUnphased Source code
ConditionIdentifiabilityCouple Source code
Cross Man page
Delta Man page
EM Source code
Frequencies Man page
Genotype Man page
MatTriSup Source code
RelCoef Man page Source code
RelCoefLine Man page Source code
RelComb Man page Source code
Relatedness Man page
Relatedness-package Man page
RelatednessCouple Source code
RelatednessLineCouple Source code
TheFifteenDeltaGraph Source code
TheNineDeltaGraph Source code
VecProbCondLine Source code
VecProbCondPhased Source code
VecProbCondUnphased Source code
ogVrai Source code

Files

src
src/BoucleEMacc.c
NAMESPACE
data
data/Genotype.rda
data/Cross.rda
data/Delta.rda
data/Frequencies.rda
R
R/Relatedness-internal.R
R/RelCoefLine.R
R/RelCoef.R
R/RelComb.R
MD5
DESCRIPTION
man
man/Relatedness-package.Rd
man/RelCoef.Rd
man/Genotype.Rd
man/RelComb.Rd
man/Cross.Rd
man/RelCoefLine.Rd
man/Delta.Rd
man/BoucleEMacc.Rd
man/Frequencies.Rd
Relatedness documentation built on May 19, 2017, 11:36 p.m.