Relatedness: An Algorithm to Infer Relatedness

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Inference of relatedness coefficients from a bi-allelic genotype matrix using a Maximum Likelihood estimation.

Author
Fabien Laporte
Date of publication
2016-06-03 19:07:38
Maintainer
Fabien Laporte <fabien.laporte@moulon.inra.fr>
License
AGPL-3
Version
1.4

View on CRAN

Man pages

BoucleEMacc
C code for the EM
Cross
Crossing matrix
Delta
List of Relatedness Coefficients
Frequencies
Allele Frequencies
Genotype
Genotype Matrix
Relatedness-package
An Algorithm to Infer Relatedness
RelCoef
Relatedness Coefficients Estimation for individuals
RelCoefLine
Relatedness Coefficients Estimation for Lines
RelComb
Computation of Linear Combination of Relatedness Coefficients

Files in this package

Relatedness
Relatedness/src
Relatedness/src/BoucleEMacc.c
Relatedness/NAMESPACE
Relatedness/data
Relatedness/data/Genotype.rda
Relatedness/data/Cross.rda
Relatedness/data/Delta.rda
Relatedness/data/Frequencies.rda
Relatedness/R
Relatedness/R/Relatedness-internal.R
Relatedness/R/RelCoefLine.R
Relatedness/R/RelCoef.R
Relatedness/R/RelComb.R
Relatedness/MD5
Relatedness/DESCRIPTION
Relatedness/man
Relatedness/man/Relatedness-package.Rd
Relatedness/man/RelCoef.Rd
Relatedness/man/Genotype.Rd
Relatedness/man/RelComb.Rd
Relatedness/man/Cross.Rd
Relatedness/man/RelCoefLine.Rd
Relatedness/man/Delta.Rd
Relatedness/man/BoucleEMacc.Rd
Relatedness/man/Frequencies.Rd